Mercurial > repos > wolma > mimodd
annotate snpeff_genomes.xml @ 18:2742ad4d1608 draft
rebase on package_python_3_4_lean
| author | wolma |
|---|---|
| date | Tue, 26 Apr 2016 11:21:43 -0400 |
| parents | 93db2f9bca12 |
| children | c46406466625 |
| rev | line source |
|---|---|
|
9
93db2f9bca12
upgrade to v0.1.7.2
Wolfgang Maier wolfgang.maier@biologie.uni-freiburg.de
parents:
8
diff
changeset
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1 <tool id="snpeff_genomes" name="List Installed SnpEff Genomes" version="0.1.7.2"> |
| 0 | 2 <description>Checks the local SnpEff installation to compile a list of currently installed genomes</description> |
| 2 | 3 <macros> |
| 4 <import>toolshed_macros.xml</import> | |
| 5 </macros> | |
| 6 <expand macro="requirements"/> | |
| 0 | 7 <version_command>mimodd version -q</version_command> |
| 8 <command> | |
| 9 mimodd snpeff-genomes -o "$outputfile" | |
| 10 </command> | |
| 11 <outputs> | |
| 12 <data name="outputfile" format="tabular" /> | |
| 13 </outputs> | |
| 14 <help> | |
| 15 .. class:: infomark | |
| 16 | |
| 17 **What it does** | |
| 18 | |
| 19 When executed this tool searches the host machine's SnpEff installation for properly registered and installed | |
| 20 genome annotation files. The resulting list is added as a plain text file to your history for use with the *Variant Annotation* Tool. | |
| 21 | |
| 22 </help> | |
| 23 | |
| 24 </tool> |