Mercurial > repos > wolma > mimodd
diff snpeff_genomes.xml @ 0:6231ae8f87b8
Uploaded
author | wolma |
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date | Wed, 11 Feb 2015 08:29:02 -0500 |
parents | |
children | a548b3c6ed00 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/snpeff_genomes.xml Wed Feb 11 08:29:02 2015 -0500 @@ -0,0 +1,20 @@ +<tool id="snpeff_genomes" name="List Installed SnpEff Genomes"> + <description>Checks the local SnpEff installation to compile a list of currently installed genomes</description> + <version_command>mimodd version -q</version_command> + <command> + mimodd snpeff-genomes -o "$outputfile" + </command> + <outputs> + <data name="outputfile" format="tabular" /> + </outputs> +<help> +.. class:: infomark + +**What it does** + +When executed this tool searches the host machine's SnpEff installation for properly registered and installed +genome annotation files. The resulting list is added as a plain text file to your history for use with the *Variant Annotation* Tool. + +</help> + +</tool>