Mercurial > repos > wolma > mimodd
comparison snpeff_genomes.xml @ 0:6231ae8f87b8
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| author | wolma |
|---|---|
| date | Wed, 11 Feb 2015 08:29:02 -0500 |
| parents | |
| children | a548b3c6ed00 |
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| -1:000000000000 | 0:6231ae8f87b8 |
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| 1 <tool id="snpeff_genomes" name="List Installed SnpEff Genomes"> | |
| 2 <description>Checks the local SnpEff installation to compile a list of currently installed genomes</description> | |
| 3 <version_command>mimodd version -q</version_command> | |
| 4 <command> | |
| 5 mimodd snpeff-genomes -o "$outputfile" | |
| 6 </command> | |
| 7 <outputs> | |
| 8 <data name="outputfile" format="tabular" /> | |
| 9 </outputs> | |
| 10 <help> | |
| 11 .. class:: infomark | |
| 12 | |
| 13 **What it does** | |
| 14 | |
| 15 When executed this tool searches the host machine's SnpEff installation for properly registered and installed | |
| 16 genome annotation files. The resulting list is added as a plain text file to your history for use with the *Variant Annotation* Tool. | |
| 17 | |
| 18 </help> | |
| 19 | |
| 20 </tool> |