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1 <tool id="fileinfo" name="Retrieve File Information">
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2 <description>for supported data formats.</description>
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2
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3 <macros>
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4 <import>toolshed_macros.xml</import>
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5 </macros>
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6 <expand macro="requirements"/>
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7 <version_command>mimodd version -q</version_command>
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8 <command>
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9 mimodd info "$ifile" -o "$outputfile" --verbose --oformat $oformat
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10 </command>
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11
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12 <inputs>
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13 <param name="ifile" type="data" format="bam,sam,vcf,bcf,fasta" label="input file" />
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14 <param name="oformat" type="select" label="output format">
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15 <option value="txt">text</option>
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16 <option value="html">html</option>
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17 </param>
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18 </inputs>
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19
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20 <outputs>
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21 <data name="outputfile" format="txt" label="Sample Info on ${on_string}">
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22 <change_format>
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23 <when input="oformat" value="html" format="html"/>
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24 </change_format>
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25 </data>
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26 </outputs>
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27
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28 <help>
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29 .. class:: infomark
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30
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31 **What it does**
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32
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33 The tool inspects the input file and generates a report summarizing its contents.
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34
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35 It autodetects and works with most file formats produced by MiModD, i.e., **SAM / BAM, vcf / bcf and fasta**, and produces a standardized report for all of them.
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36
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37 </help>
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38 </tool>
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