Mercurial > repos > wolma > mimodd
annotate fileinfo.xml @ 16:e676aa6997cc draft
Uploaded
| author | wolma |
|---|---|
| date | Mon, 25 Apr 2016 18:00:02 -0400 |
| parents | 93db2f9bca12 |
| children | c46406466625 |
| rev | line source |
|---|---|
|
9
93db2f9bca12
upgrade to v0.1.7.2
Wolfgang Maier wolfgang.maier@biologie.uni-freiburg.de
parents:
8
diff
changeset
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1 <tool id="fileinfo" name="Retrieve File Information" version="0.1.7.2"> |
| 0 | 2 <description>for supported data formats.</description> |
| 2 | 3 <macros> |
| 4 <import>toolshed_macros.xml</import> | |
| 5 </macros> | |
| 6 <expand macro="requirements"/> | |
| 0 | 7 <version_command>mimodd version -q</version_command> |
| 8 <command> | |
| 9 mimodd info "$ifile" -o "$outputfile" --verbose --oformat $oformat | |
| 10 </command> | |
| 11 | |
| 12 <inputs> | |
| 13 <param name="ifile" type="data" format="bam,sam,vcf,bcf,fasta" label="input file" /> | |
| 14 <param name="oformat" type="select" label="output format"> | |
| 15 <option value="txt">text</option> | |
| 16 <option value="html">html</option> | |
| 17 </param> | |
| 18 </inputs> | |
| 19 | |
| 20 <outputs> | |
| 21 <data name="outputfile" format="txt" label="Sample Info on ${on_string}"> | |
| 22 <change_format> | |
| 23 <when input="oformat" value="html" format="html"/> | |
| 24 </change_format> | |
| 25 </data> | |
| 26 </outputs> | |
| 27 | |
| 28 <help> | |
| 29 .. class:: infomark | |
| 30 | |
| 31 **What it does** | |
| 32 | |
| 33 The tool inspects the input file and generates a report summarizing its contents. | |
| 34 | |
| 35 It autodetects and works with most file formats produced by MiModD, i.e., **SAM / BAM, vcf / bcf and fasta**, and produces a standardized report for all of them. | |
| 36 | |
| 37 </help> | |
| 38 </tool> |