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1 <tool id="snpeff_genomes" name="List Installed SnpEff Genomes" version="0.1.7.3">
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2 <description>Checks the local SnpEff installation to compile a list of currently installed genomes</description>
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2
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3 <macros>
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4 <import>toolshed_macros.xml</import>
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5 </macros>
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6 <expand macro="requirements" />
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7 <version_command>python3 -m MiModD version -q</version_command>
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8 <command>
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9 python3 -m MiModD snpeff-genomes -o "$outputfile"
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10 </command>
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11 <outputs>
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12 <data format="tabular" name="outputfile" />
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13 </outputs>
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14 <help>
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15 .. class:: infomark
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16
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17 **What it does**
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18
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19 When executed this tool searches the host machine's SnpEff installation for properly registered and installed
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20 genome annotation files. The resulting list is added as a plain text file to your history for use with the *Variant Annotation* Tool.
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21
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22 </help>
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24 </tool> |
