Mercurial > repos > wolma > mimodd

comparison covstats.xml @ 23:5db0545b9004 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
update to v0.1.7.3
author wolma
date Thu, 21 Jul 2016 03:55:49 -0400
parents c46406466625
children
comparison
equal deleted inserted replaced
22:24154c580718 23:5db0545b9004
1 <tool id="coverage_stats" name="Coverage Statistics" version="0.1.7.2"> 1 <tool id="coverage_stats" name="Coverage Statistics" version="0.1.7.3">
2 <description>Calculate coverage statistics for a BCF file as generated by the Variant Calling tool</description> 2 <description>Calculate coverage statistics for a BCF file as generated by the Variant Calling tool</description>
3 <macros> 3 <macros>
4 <import>toolshed_macros.xml</import> 4 <import>toolshed_macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements"/> 6 <expand macro="requirements" />
7 <version_command>python3 -m MiModD version -q</version_command> 7 <version_command>python3 -m MiModD version -q</version_command>
8 <command> 8 <command>
9 python3 -m MiModD covstats "$ifile" --ofile "$output_vcf" 9 python3 -m MiModD covstats "$ifile" --ofile "$output_vcf"
10 </command> 10 </command>
11 11
12 <inputs> 12 <inputs>
13 <param name="ifile" type="data" format="bcf" label="BCF input file" help="Use the Variant Calling tool to generate input for this tool."/> 13 <param format="bcf" help="Use the Variant Calling tool to generate input for this tool." label="BCF input file" name="ifile" type="data" />
14 </inputs> 14 </inputs>
15 <outputs> 15 <outputs>
16 <data name="output_vcf" format="tabular" label="Coverage Statistics for ${on_string}"/> 16 <data format="tabular" label="Coverage Statistics for ${on_string}" name="output_vcf" />
17 </outputs> 17 </outputs>
18 18
19 <help> 19 <help>
20 .. class:: infomark 20 .. class:: infomark
21 21