diff covstats.xml @ 23:5db0545b9004 draft

update to v0.1.7.3
author wolma
date Thu, 21 Jul 2016 03:55:49 -0400
parents c46406466625
children
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--- a/covstats.xml	Sun Jun 12 07:39:46 2016 -0400
+++ b/covstats.xml	Thu Jul 21 03:55:49 2016 -0400
@@ -1,19 +1,19 @@
-<tool id="coverage_stats" name="Coverage Statistics" version="0.1.7.2">
+<tool id="coverage_stats" name="Coverage Statistics" version="0.1.7.3">
   <description>Calculate coverage statistics for a BCF file as generated by the Variant Calling tool</description>
   <macros>
     <import>toolshed_macros.xml</import>
   </macros>
-  <expand macro="requirements"/>
+  <expand macro="requirements" />
   <version_command>python3 -m MiModD version -q</version_command>
   <command> 
 	python3 -m MiModD covstats "$ifile" --ofile "$output_vcf"
   </command>
 
   <inputs>
-      <param name="ifile" type="data" format="bcf" label="BCF input file" help="Use the Variant Calling tool to generate input for this tool."/>
+      <param format="bcf" help="Use the Variant Calling tool to generate input for this tool." label="BCF input file" name="ifile" type="data" />
   </inputs>
   <outputs>
-    <data name="output_vcf" format="tabular" label="Coverage Statistics for ${on_string}"/>
+    <data format="tabular" label="Coverage Statistics for ${on_string}" name="output_vcf" />
   </outputs>
 
 <help>
@@ -28,4 +28,4 @@
    The tool treats genome positions missing from the BCF input as zero coverage, so it is safe to use ONLY with BCF files produced by the *Variant Calling* tool or through other commands that keep the information for all sites.
 
 </help>
-</tool>
+</tool>
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