Mercurial > repos > wolma > mimodd
diff covstats.xml @ 23:5db0545b9004 draft
update to v0.1.7.3
author | wolma |
---|---|
date | Thu, 21 Jul 2016 03:55:49 -0400 |
parents | c46406466625 |
children |
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--- a/covstats.xml Sun Jun 12 07:39:46 2016 -0400 +++ b/covstats.xml Thu Jul 21 03:55:49 2016 -0400 @@ -1,19 +1,19 @@ -<tool id="coverage_stats" name="Coverage Statistics" version="0.1.7.2"> +<tool id="coverage_stats" name="Coverage Statistics" version="0.1.7.3"> <description>Calculate coverage statistics for a BCF file as generated by the Variant Calling tool</description> <macros> <import>toolshed_macros.xml</import> </macros> - <expand macro="requirements"/> + <expand macro="requirements" /> <version_command>python3 -m MiModD version -q</version_command> <command> python3 -m MiModD covstats "$ifile" --ofile "$output_vcf" </command> <inputs> - <param name="ifile" type="data" format="bcf" label="BCF input file" help="Use the Variant Calling tool to generate input for this tool."/> + <param format="bcf" help="Use the Variant Calling tool to generate input for this tool." label="BCF input file" name="ifile" type="data" /> </inputs> <outputs> - <data name="output_vcf" format="tabular" label="Coverage Statistics for ${on_string}"/> + <data format="tabular" label="Coverage Statistics for ${on_string}" name="output_vcf" /> </outputs> <help> @@ -28,4 +28,4 @@ The tool treats genome positions missing from the BCF input as zero coverage, so it is safe to use ONLY with BCF files produced by the *Variant Calling* tool or through other commands that keep the information for all sites. </help> -</tool> +</tool> \ No newline at end of file