0
|
1 <tool id="snpeff_genomes" name="List Installed SnpEff Genomes">
|
|
2 <description>Checks the local SnpEff installation to compile a list of currently installed genomes</description>
|
|
3 <requirements>
|
|
4 <requirement type="package" version="0.1.5">mimodd</requirement>
|
|
5 </requirements>
|
|
6 <version_command>mimodd version -q</version_command>
|
|
7 <command>
|
|
8 mimodd snpeff-genomes -o $outputfile
|
|
9 </command>
|
|
10 <outputs>
|
|
11 <data name="outputfile" format="tabular" />
|
|
12 </outputs>
|
|
13 <help>
|
|
14 .. class:: infomark
|
|
15
|
|
16 **What it does**
|
|
17
|
|
18 When executed this tool searches the host machine's SnpEff installation for properly registered and installed
|
|
19 genome annotation files. The resulting list is added as a plain text file to your history for use with the *Variant Annotation* Tool.
|
|
20
|
|
21 </help>
|
|
22
|
|
23 </tool>
|