Mercurial > repos > workflow4metabolomics > influx_si

diff test-data/e_coli_i.log @ 0:9b03a930b08b draft

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"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
author workflow4metabolomics
date Mon, 04 May 2020 03:24:12 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/e_coli_i.log	Mon May 04 03:24:12 2020 -0400
@@ -0,0 +1,47 @@
+"/usr/local/miniconda3/bin/influx_i" "e_coli_i.ftbl"
+code gen: 2020-03-25 15:40:11
+executing: "/usr/local/miniconda3/bin/python3.7" "/home/STORAGE/local/miniconda3/bin/ftbl2optR.py" "--tblimit" "0" "--ropts" "noscale=TRUE; clowp=1e-09; zc=0.0; time_order='2'; TIMEIT=TRUE" "--case_i" "e_coli_i.ftbl"
+executing: R --vanilla --slave < e_coli_i.R
+calcul  : 2020-03-25 15:40:14
+load    : 2020-03-25 15:40:18.59 cpu=1.02
+rinit   : 2020-03-25 15:40:18.61 cpu=1.031
+r_flux  : 2020-03-25 15:40:18.61 cpu=1.031
+Afl qr(): 2020-03-25 15:40:18.68 cpu=1.101
+dfl_dffg: 2020-03-25 15:40:18.91 cpu=1.139
+spAbr   : 2020-03-25 15:40:18.91 cpu=1.143
+weight 1: 2020-03-25 15:40:18.91 cpu=1.143
+weight 2: 2020-03-25 15:40:18.95 cpu=1.225
+weight 3: 2020-03-25 15:40:19.02 cpu=1.348
+weight 4: 2020-03-25 15:40:19.07 cpu=1.456
+weight 5: 2020-03-25 15:40:19.10 cpu=1.506
+weight 6: 2020-03-25 15:40:19.17 cpu=1.574
+measure : 2020-03-25 15:40:19.25 cpu=1.602
+ineq    : 2020-03-25 15:40:19.33 cpu=1.683
+preopt  : 2020-03-25 15:40:19.57 cpu=2.056
+labargs : 2020-03-25 15:40:19.58 cpu=2.069
+cl expor: 2020-03-25 15:40:20.32 cpu=2.089
+cl sourc: 2020-03-25 15:40:21.20 cpu=2.204
+run    1: 2020-03-25 15:40:24.75 cpu=5.386
+Starting point
+zc ineq : 2020-03-25 15:40:24.75 cpu=5.387
+kvh init: 2020-03-25 15:40:24.78 cpu=5.432
+check ja: 2020-03-25 15:40:25.27 cpu=5.625
+optim   : 2020-03-25 15:40:26.47 cpu=5.632
+it=0	res=237.7947
+it=1	res=70.06248	normstep=30.47659	btk=1
+it=2	res=36.43491	normstep=31.35182	btk=1
+it=3	res=21.83319	normstep=0.2793447	btk=1
+it=4	res=21.7384	normstep=0.03332941	btk=1
+it=5	res=21.72383	normstep=0.03867587	btk=1
+it=6	res=21.6348	normstep=0.08885869	btk=1
+it=7	res=21.37745	normstep=0.4890457	btk=0.5
+it=8	res=21.24931	normstep=0.6490092	btk=1
+it=9	res=20.96647	normstep=0.3171006	btk=1
+it=10	res=20.96366	normstep=0.1287473	btk=1
+it=15	res=20.96358	normstep=5.449035e-05	btk=1
+secondzc: 2020-03-25 15:40:41.08 cpu=8.101
+After the first optimization, no zero crossing inequality was activated. So no reoptimization
+postopt : 2020-03-25 15:40:41.09 cpu=8.111
+linstats: 2020-03-25 15:40:41.87 cpu=8.697
+rend    : 2020-03-25 15:40:42.16 cpu=9.089
+end     : 2020-03-25 15:40:43