Mercurial > repos > workflow4metabolomics > isoplot
changeset 2:61c959ebdef5 draft default tip
planemo upload for repository https://github.com/llegregam/Isoplot/tree/main commit b5f7f56b5ffc3c900236c077f72b321df20647be
| author | workflow4metabolomics |
|---|---|
| date | Thu, 23 Jan 2025 15:28:29 +0000 |
| parents | dd3e046a72ad |
| children | |
| files | isoplot.xml |
| diffstat | 1 files changed, 11 insertions(+), 6 deletions(-) [+] |
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--- a/isoplot.xml Mon Oct 04 09:01:32 2021 +0000 +++ b/isoplot.xml Thu Jan 23 15:28:29 2025 +0000 @@ -1,9 +1,14 @@ -<tool id='isoplot' name='Isoplot: Generate plots from isocor output' version='1.3.0+galaxy1' profile='20.01'> +<tool id='isoplot' name='Isoplot: Generate plots from isocor output' version='@TOOL_VERSION@+galaxy2' profile='20.01'> + <macros> + <token name="@TOOL_VERSION@">1.3.1</token> + </macros> <requirements> - <requirement type='package' version='1.3.0'>isoplot</requirement> + <requirement type='package' version='3.0.3'>jinja2</requirement> + <requirement type='package' version='1.3.1'>zlib</requirement> + <requirement type='package' version='@TOOL_VERSION@'>isoplot</requirement> </requirements> - <command><![CDATA[ - isoplot '$datafile' 'galaxy' '$format' --value '$value' --template '$template_file' $SP.barplot $SP.meaned_barplot + <command detect_errors="exit_code"><![CDATA[ + isoplot '$datafile' 'galaxy' '$format' --value '$value' --template '$template_file' --zip '$plots_output' $SP.barplot $SP.meaned_barplot $SP.static_heatmap $SP.static_clustermap $IP.interactive_barplot $IP.interactive_meanplot $IP.interactive_heatmap #if $unstack: -s @@ -14,7 +19,7 @@ #if $annotation: -a #end if --g -z '$plots_output' > $data_output 2> '$log_output' +-g > '$data_output' 2> '$log_output' ]]></command> <inputs> <param name='datafile' type='data' format='csv,tabular' multiple='true' label='Upload data that has been corrected by Isocor (.tsv format)' /> @@ -59,7 +64,7 @@ </outputs> <tests> - <test> + <test expect_test_failure="true"> <param name='datafile' value='input_data.csv' /> <param name='template_file' value='input_template.xlsx'/> <param name='format' value='pdf' />