Mercurial > repos > workflow4metabolomics > metams_plot

comparison metaMS_plot.xml @ 3:ba609408eee9 draft default tip

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planemo upload for repository https://github.com/workflow4metabolomics/metaMS commit eb45457830f9d220bcb845acf71bffb50038a4c7-dirty
author workflow4metabolomics
date Thu, 07 May 2020 03:09:19 -0400
parents b60dc620bd14
children
comparison
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2:96debae917e4 3:ba609408eee9
1 <tool id="metams_plot" name="metaMS.plot" version="1.0.0"> 1 <tool id="metams_plot" name="metaMS.plot" version="@TOOL_VERSION@+galaxy0">
2 2
3 <description>GC-MS data preprocessing using metaMS package</description> 3 <description>GC-MS data preprocessing using metaMS package</description>
4 4
5 <macros> 5 <macros>
6 <import>macros.xml</import> 6 <import>macros.xml</import>
117 <output name="unknownPdf" value="GCMS_EIC.pdf" ftype="pdf" compare="sim_size" delta="600"/> 117 <output name="unknownPdf" value="GCMS_EIC.pdf" ftype="pdf" compare="sim_size" delta="600"/>
118 </test> 118 </test>
119 --> 119 -->
120 </tests> 120 </tests>
121 121
122 <help> 122 <help><![CDATA[
123 123
124 <!-- 124 @HELP_AUTHORS@
125 TODO : Add test on EICs (problem with gs not found whereas I added pip install ghostscript and bgs in .travis.yml)
126 -->
127
128 .. class:: infomark
129
130 **Author(s)** Ron Wehrens (ron.wehrens@gmail.com), Georg Weingart, Fulvio Mattivi
131
132 .. class:: infomark
133
134 **Galaxy wrapper and scripts developpers** Guitton Yann LABERCA yann.guitton@oniris-nantes.fr and Saint-Vanne Julien julien.saint-vanne@sb-roscoff.fr
135
136 .. class:: infomark
137
138 **Please cites**
139
140 metaMS : Wehrens, R.; Weingart, G.; Mattivi, F. Journal of Chromatography B.
141
142 xcms : Smith, C. A.; Want, E. J.; O’Maille, G.; Abagyan, R.; Siuzdak, G. Anal. Chem. 2006, 78, 779–787.
143
144
145 ---------------------------------------------------
146 125
147 ==================== 126 ====================
148 metaMS_plot 127 metaMS_plot
149 ==================== 128 ====================
150 ------------ 129 ------------
254 -------------- 233 --------------
255 **Version 1.0 - 20/05/2019** 234 **Version 1.0 - 20/05/2019**
256 235
257 - NEW: new tool extract from previous metaMS_runGC tool 236 - NEW: new tool extract from previous metaMS_runGC tool
258 237
259 </help> 238 ]]></help>
260 239
261 <citations> 240 <expand macro="citation" />
262 <citation type="doi">10.1016/j.jchromb.2014.02.051</citation> 241
263 <citation type="doi">10.1093/bioinformatics/btu813</citation>
264 </citations>
265
266 </tool> 242 </tool>