Mercurial > repos > workflow4metabolomics > metams_plot
changeset 3:ba609408eee9 draft default tip
planemo upload for repository https://github.com/workflow4metabolomics/metaMS commit eb45457830f9d220bcb845acf71bffb50038a4c7-dirty
| author | workflow4metabolomics |
|---|---|
| date | Thu, 07 May 2020 03:09:19 -0400 (2020-05-07) |
| parents | 96debae917e4 |
| children | |
| files | macros.xml metaMS_plot.xml static/images/workflow_metaMS_plot.jpg static/images/workflow_metaMS_plot.png |
| diffstat | 4 files changed, 37 insertions(+), 32 deletions(-) [+] |
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--- a/macros.xml Fri Sep 06 06:12:08 2019 -0400 +++ b/macros.xml Thu May 07 03:09:19 2020 -0400 @@ -2,6 +2,8 @@ <macros> + <token name="@TOOL_VERSION@">1.22.0</token> + <xml name="stdio"> <stdio> <exit_code range="1" level="fatal" /> @@ -10,8 +12,8 @@ <xml name="requirements"> <requirements> - <requirement type="package" version="1.18.1">bioconductor-metams</requirement> - <requirement type="package" version="1.1_4">r-batch</requirement> + <requirement type="package" version="@TOOL_VERSION@">bioconductor-metams</requirement> + <requirement type="package" version="1.1_5">r-batch</requirement> <yield /> </requirements> </xml> @@ -75,4 +77,31 @@ #end if </token> + <token name="@HELP_AUTHORS@"> + .. class:: infomark + + **Author(s)** Ron Wehrens (ron.wehrens@gmail.com), Georg Weingart, Fulvio Mattivi + + .. class:: infomark + + **Galaxy wrapper and scripts developpers** Guitton Yann LABERCA yann.guitton@oniris-nantes.fr and Saint-Vanne Julien julien.saint-vanne@sb-roscoff.fr + + .. class:: infomark + + **Please cites** + + metaMS : Wehrens, R.; Weingart, G.; Mattivi, F. Journal of Chromatography B. + + xcms : Smith, C. A.; Want, E. J.; O’Maille, G.; Abagyan, R.; Siuzdak, G. Anal. Chem. 2006, 78, 779–787. + + CAMERA : Kuhl, C.; Tautenhahn, R.; Böttcher, C.; Larson, T. R.; Neumann, S. Analytical Chemistry 2012, 84, 283–289. + </token> + + <xml name="citation"> + <citations> + <citation type="doi">10.1016/j.jchromb.2014.02.051</citation> + <citation type="doi">10.1093/bioinformatics/btu813</citation> + </citations> + </xml> + </macros> \ No newline at end of file
--- a/metaMS_plot.xml Fri Sep 06 06:12:08 2019 -0400 +++ b/metaMS_plot.xml Thu May 07 03:09:19 2020 -0400 @@ -1,4 +1,4 @@ - <tool id="metams_plot" name="metaMS.plot" version="1.0.0"> + <tool id="metams_plot" name="metaMS.plot" version="@TOOL_VERSION@+galaxy0"> <description>GC-MS data preprocessing using metaMS package</description> @@ -119,30 +119,9 @@ --> </tests> - <help> - -<!-- -TODO : Add test on EICs (problem with gs not found whereas I added pip install ghostscript and bgs in .travis.yml) ---> - -.. class:: infomark - -**Author(s)** Ron Wehrens (ron.wehrens@gmail.com), Georg Weingart, Fulvio Mattivi - -.. class:: infomark + <help><![CDATA[ -**Galaxy wrapper and scripts developpers** Guitton Yann LABERCA yann.guitton@oniris-nantes.fr and Saint-Vanne Julien julien.saint-vanne@sb-roscoff.fr - -.. class:: infomark - -**Please cites** - - metaMS : Wehrens, R.; Weingart, G.; Mattivi, F. Journal of Chromatography B. - - xcms : Smith, C. A.; Want, E. J.; O’Maille, G.; Abagyan, R.; Siuzdak, G. Anal. Chem. 2006, 78, 779–787. - - ---------------------------------------------------- +@HELP_AUTHORS@ ==================== metaMS_plot @@ -256,11 +235,8 @@ - NEW: new tool extract from previous metaMS_runGC tool - </help> + ]]></help> - <citations> - <citation type="doi">10.1016/j.jchromb.2014.02.051</citation> - <citation type="doi">10.1093/bioinformatics/btu813</citation> - </citations> - + <expand macro="citation" /> + </tool> \ No newline at end of file