Mercurial > repos > workflow4metabolomics > physiofit

annotate test-data/config_file.yml @ 2:232ad69fc93c draft

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planemo upload for repository https://github.com/MetaSys-LISBP/PhysioFit commit 79951a0ab2644ba8ca6615200e9be1a8645d78d4
author workflow4metabolomics
date Tue, 16 Jan 2024 15:42:03 +0000
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2
232ad69fc93c planemo upload for repository https://github.com/MetaSys-LISBP/PhysioFit commit 79951a0ab2644ba8ca6615200e9be1a8645d78d4
workflow4metabolomics
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1 iterations: 100
232ad69fc93c planemo upload for repository https://github.com/MetaSys-LISBP/PhysioFit commit 79951a0ab2644ba8ca6615200e9be1a8645d78d4
workflow4metabolomics
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2 mc: true
232ad69fc93c planemo upload for repository https://github.com/MetaSys-LISBP/PhysioFit commit 79951a0ab2644ba8ca6615200e9be1a8645d78d4
workflow4metabolomics
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3 model:
232ad69fc93c planemo upload for repository https://github.com/MetaSys-LISBP/PhysioFit commit 79951a0ab2644ba8ca6615200e9be1a8645d78d4
workflow4metabolomics
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4 bounds:
232ad69fc93c planemo upload for repository https://github.com/MetaSys-LISBP/PhysioFit commit 79951a0ab2644ba8ca6615200e9be1a8645d78d4
workflow4metabolomics
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5 Ace_M0: (1e-06, 50)
232ad69fc93c planemo upload for repository https://github.com/MetaSys-LISBP/PhysioFit commit 79951a0ab2644ba8ca6615200e9be1a8645d78d4
workflow4metabolomics
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6 Ace_q: (-50, 50)
232ad69fc93c planemo upload for repository https://github.com/MetaSys-LISBP/PhysioFit commit 79951a0ab2644ba8ca6615200e9be1a8645d78d4
workflow4metabolomics
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7 Glc_M0: (1e-06, 50)
232ad69fc93c planemo upload for repository https://github.com/MetaSys-LISBP/PhysioFit commit 79951a0ab2644ba8ca6615200e9be1a8645d78d4
workflow4metabolomics
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8 Glc_q: (-50, 50)
232ad69fc93c planemo upload for repository https://github.com/MetaSys-LISBP/PhysioFit commit 79951a0ab2644ba8ca6615200e9be1a8645d78d4
workflow4metabolomics
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9 X_0: (0.001, 10)
232ad69fc93c planemo upload for repository https://github.com/MetaSys-LISBP/PhysioFit commit 79951a0ab2644ba8ca6615200e9be1a8645d78d4
workflow4metabolomics
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10 growth_rate: (0.001, 3)
232ad69fc93c planemo upload for repository https://github.com/MetaSys-LISBP/PhysioFit commit 79951a0ab2644ba8ca6615200e9be1a8645d78d4
workflow4metabolomics
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11 model_name: Steady-state batch model
232ad69fc93c planemo upload for repository https://github.com/MetaSys-LISBP/PhysioFit commit 79951a0ab2644ba8ca6615200e9be1a8645d78d4
workflow4metabolomics
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12 parameters_to_estimate:
232ad69fc93c planemo upload for repository https://github.com/MetaSys-LISBP/PhysioFit commit 79951a0ab2644ba8ca6615200e9be1a8645d78d4
workflow4metabolomics
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13 Ace_M0: 1
232ad69fc93c planemo upload for repository https://github.com/MetaSys-LISBP/PhysioFit commit 79951a0ab2644ba8ca6615200e9be1a8645d78d4
workflow4metabolomics
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14 Ace_q: 1
232ad69fc93c planemo upload for repository https://github.com/MetaSys-LISBP/PhysioFit commit 79951a0ab2644ba8ca6615200e9be1a8645d78d4
workflow4metabolomics
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15 Glc_M0: 1
232ad69fc93c planemo upload for repository https://github.com/MetaSys-LISBP/PhysioFit commit 79951a0ab2644ba8ca6615200e9be1a8645d78d4
workflow4metabolomics
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16 Glc_q: 1
232ad69fc93c planemo upload for repository https://github.com/MetaSys-LISBP/PhysioFit commit 79951a0ab2644ba8ca6615200e9be1a8645d78d4
workflow4metabolomics
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17 X_0: 1
232ad69fc93c planemo upload for repository https://github.com/MetaSys-LISBP/PhysioFit commit 79951a0ab2644ba8ca6615200e9be1a8645d78d4
workflow4metabolomics
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18 growth_rate: 1
232ad69fc93c planemo upload for repository https://github.com/MetaSys-LISBP/PhysioFit commit 79951a0ab2644ba8ca6615200e9be1a8645d78d4
workflow4metabolomics
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19 path_to_data: C:\Users\millard\Documents\GIT\PhysioFit\data_test\Steady-state_model\data.txt
232ad69fc93c planemo upload for repository https://github.com/MetaSys-LISBP/PhysioFit commit 79951a0ab2644ba8ca6615200e9be1a8645d78d4
workflow4metabolomics
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20 sds:
232ad69fc93c planemo upload for repository https://github.com/MetaSys-LISBP/PhysioFit commit 79951a0ab2644ba8ca6615200e9be1a8645d78d4
workflow4metabolomics
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21 Ace: 0.2
232ad69fc93c planemo upload for repository https://github.com/MetaSys-LISBP/PhysioFit commit 79951a0ab2644ba8ca6615200e9be1a8645d78d4
workflow4metabolomics
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22 Glc: 0.46
232ad69fc93c planemo upload for repository https://github.com/MetaSys-LISBP/PhysioFit commit 79951a0ab2644ba8ca6615200e9be1a8645d78d4
workflow4metabolomics
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23 X: 0.02