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1 # Makefile.in generated by automake 1.10.1 from Makefile.am.
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2 # @configure_input@
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3
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4 # Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
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5 # 2003, 2004, 2005, 2006, 2007, 2008 Free Software Foundation, Inc.
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6 # This Makefile.in is free software; the Free Software Foundation
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7 # gives unlimited permission to copy and/or distribute it,
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8 # with or without modifications, as long as this notice is preserved.
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9
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10 # This program is distributed in the hope that it will be useful,
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11 # but WITHOUT ANY WARRANTY, to the extent permitted by law; without
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12 # even the implied warranty of MERCHANTABILITY or FITNESS FOR A
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13 # PARTICULAR PURPOSE.
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14
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15 @SET_MAKE@
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16
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17 # Copyright (C) 2008 Assaf Gordon <gordon@cshl.edu>
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18 #
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19 # This file is free software; as a special exception the author gives
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20 # unlimited permission to copy and/or distribute it, with or without
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21 # modifications, as long as this notice is preserved.
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22 #
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23 # This program is distributed in the hope that it will be useful, but
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24 # WITHOUT ANY WARRANTY, to the extent permitted by law; without even the
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25 # implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
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26 VPATH = @srcdir@
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27 pkgdatadir = $(datadir)/@PACKAGE@
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28 pkglibdir = $(libdir)/@PACKAGE@
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29 pkgincludedir = $(includedir)/@PACKAGE@
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30 am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
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31 install_sh_DATA = $(install_sh) -c -m 644
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32 install_sh_PROGRAM = $(install_sh) -c
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33 install_sh_SCRIPT = $(install_sh) -c
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34 INSTALL_HEADER = $(INSTALL_DATA)
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35 transform = $(program_transform_name)
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36 NORMAL_INSTALL = :
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37 PRE_INSTALL = :
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38 POST_INSTALL = :
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39 NORMAL_UNINSTALL = :
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40 PRE_UNINSTALL = :
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41 POST_UNINSTALL = :
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42 build_triplet = @build@
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43 host_triplet = @host@
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44 subdir = galaxy/tools/fastx_toolkit
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45 DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in
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48 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
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49 $(ACLOCAL_M4)
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50 mkinstalldirs = $(install_sh) -d
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51 CONFIG_HEADER = $(top_builddir)/config.h
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52 CONFIG_CLEAN_FILES =
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53 SOURCES =
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54 DIST_SOURCES =
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55 DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
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56 ACLOCAL = @ACLOCAL@
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57 AMTAR = @AMTAR@
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58 AUTOCONF = @AUTOCONF@
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59 AUTOHEADER = @AUTOHEADER@
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60 AUTOMAKE = @AUTOMAKE@
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61 AWK = @AWK@
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62 CC = @CC@
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63 CCDEPMODE = @CCDEPMODE@
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64 CFLAGS = @CFLAGS@
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65 CPP = @CPP@
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66 CPPFLAGS = @CPPFLAGS@
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67 CXX = @CXX@
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68 CXXCPP = @CXXCPP@
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69 CXXDEPMODE = @CXXDEPMODE@
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70 CXXFLAGS = @CXXFLAGS@
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71 CYGPATH_W = @CYGPATH_W@
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72 DEFS = @DEFS@
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73 DEPDIR = @DEPDIR@
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74 ECHO_C = @ECHO_C@
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75 ECHO_N = @ECHO_N@
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76 ECHO_T = @ECHO_T@
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77 EGREP = @EGREP@
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78 EXEEXT = @EXEEXT@
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79 GREP = @GREP@
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80 INSTALL = @INSTALL@
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81 INSTALL_DATA = @INSTALL_DATA@
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82 INSTALL_PROGRAM = @INSTALL_PROGRAM@
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83 INSTALL_SCRIPT = @INSTALL_SCRIPT@
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84 INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
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85 LDFLAGS = @LDFLAGS@
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86 LIBOBJS = @LIBOBJS@
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87 LIBS = @LIBS@
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88 LTLIBOBJS = @LTLIBOBJS@
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89 MAKEINFO = @MAKEINFO@
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90 MKDIR_P = @MKDIR_P@
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91 OBJEXT = @OBJEXT@
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92 PACKAGE = @PACKAGE@
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93 PACKAGE_BUGREPORT = @PACKAGE_BUGREPORT@
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94 PACKAGE_NAME = @PACKAGE_NAME@
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95 PACKAGE_STRING = @PACKAGE_STRING@
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96 PACKAGE_TARNAME = @PACKAGE_TARNAME@
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97 PACKAGE_VERSION = @PACKAGE_VERSION@
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98 PATH_SEPARATOR = @PATH_SEPARATOR@
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99 RANLIB = @RANLIB@
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100 SET_MAKE = @SET_MAKE@
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101 SHELL = @SHELL@
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102 STRIP = @STRIP@
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103 VERSION = @VERSION@
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104 abs_builddir = @abs_builddir@
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105 abs_srcdir = @abs_srcdir@
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106 abs_top_builddir = @abs_top_builddir@
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107 abs_top_srcdir = @abs_top_srcdir@
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108 ac_ct_CC = @ac_ct_CC@
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109 ac_ct_CXX = @ac_ct_CXX@
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110 am__include = @am__include@
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111 am__leading_dot = @am__leading_dot@
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112 am__quote = @am__quote@
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113 am__tar = @am__tar@
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114 am__untar = @am__untar@
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115 bindir = @bindir@
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116 build = @build@
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117 build_alias = @build_alias@
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118 build_cpu = @build_cpu@
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119 build_os = @build_os@
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120 build_vendor = @build_vendor@
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121 builddir = @builddir@
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122 canonical_host_type = @canonical_host_type@
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123 datadir = @datadir@
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124 datarootdir = @datarootdir@
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125 docdir = @docdir@
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126 dvidir = @dvidir@
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127 exec_prefix = @exec_prefix@
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128 host = @host@
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129 host_alias = @host_alias@
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130 host_cpu = @host_cpu@
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131 host_os = @host_os@
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132 host_vendor = @host_vendor@
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133 htmldir = @htmldir@
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134 includedir = @includedir@
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135 infodir = @infodir@
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136 install_sh = @install_sh@
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137 libdir = @libdir@
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138 libexecdir = @libexecdir@
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139 localedir = @localedir@
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140 localstatedir = @localstatedir@
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141 mandir = @mandir@
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142 mkdir_p = @mkdir_p@
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143 oldincludedir = @oldincludedir@
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144 pdfdir = @pdfdir@
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145 prefix = @prefix@
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146 program_transform_name = @program_transform_name@
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147 psdir = @psdir@
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148 sbindir = @sbindir@
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149 sharedstatedir = @sharedstatedir@
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150 srcdir = @srcdir@
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151 sysconfdir = @sysconfdir@
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152 target_alias = @target_alias@
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153 top_builddir = @top_builddir@
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154 top_srcdir = @top_srcdir@
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155 EXTRA_DIST = fastq_quality_converter.xml \
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156 fastq_quality_filter.xml \
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157 fastx_quality_statistics.xml \
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158 fastq_to_fasta.xml \
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159 fastx_artifacts_filter.xml \
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160 fastx_clipper.xml \
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161 fastx_reverse_complement.xml \
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162 fastx_trimmer.xml \
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163 fastx_barcode_splitter.xml \
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164 fastx_nucleotides_distribution.xml \
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165 fastq_quality_boxplot.xml \
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166 fasta_clipping_histogram.xml \
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167 fastx_collapser.xml
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168
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169 all: all-am
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170
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171 .SUFFIXES:
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172 $(srcdir)/Makefile.in: $(srcdir)/Makefile.am $(am__configure_deps)
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173 @for dep in $?; do \
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174 case '$(am__configure_deps)' in \
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175 *$$dep*) \
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176 cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh \
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177 && exit 0; \
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178 exit 1;; \
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179 esac; \
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180 done; \
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181 echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu galaxy/tools/fastx_toolkit/Makefile'; \
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182 cd $(top_srcdir) && \
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183 $(AUTOMAKE) --gnu galaxy/tools/fastx_toolkit/Makefile
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184 .PRECIOUS: Makefile
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185 Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
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186 @case '$?' in \
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187 *config.status*) \
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188 cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
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189 *) \
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190 echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
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191 cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
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192 esac;
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193
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194 $(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
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195 cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
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196
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197 $(top_srcdir)/configure: $(am__configure_deps)
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198 cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
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199 $(ACLOCAL_M4): $(am__aclocal_m4_deps)
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200 cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
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201 tags: TAGS
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202 TAGS:
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203
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204 ctags: CTAGS
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205 CTAGS:
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206
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207
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208 distdir: $(DISTFILES)
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209 @srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
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210 topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
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211 list='$(DISTFILES)'; \
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212 dist_files=`for file in $$list; do echo $$file; done | \
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213 sed -e "s|^$$srcdirstrip/||;t" \
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214 -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
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215 case $$dist_files in \
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216 */*) $(MKDIR_P) `echo "$$dist_files" | \
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217 sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
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218 sort -u` ;; \
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219 esac; \
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220 for file in $$dist_files; do \
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221 if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
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222 if test -d $$d/$$file; then \
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223 dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
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224 if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
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225 cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
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226 fi; \
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227 cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
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228 else \
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229 test -f $(distdir)/$$file \
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230 || cp -p $$d/$$file $(distdir)/$$file \
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231 || exit 1; \
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232 fi; \
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233 done
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234 check-am: all-am
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235 check: check-am
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236 all-am: Makefile
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237 installdirs:
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238 install: install-am
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239 install-exec: install-exec-am
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240 install-data: install-data-am
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241 uninstall: uninstall-am
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242
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243 install-am: all-am
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244 @$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
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245
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246 installcheck: installcheck-am
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247 install-strip:
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248 $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
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249 install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
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250 `test -z '$(STRIP)' || \
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251 echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
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252 mostlyclean-generic:
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253
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254 clean-generic:
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255
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256 distclean-generic:
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257 -test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
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258
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259 maintainer-clean-generic:
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260 @echo "This command is intended for maintainers to use"
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261 @echo "it deletes files that may require special tools to rebuild."
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262 clean: clean-am
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263
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264 clean-am: clean-generic mostlyclean-am
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265
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266 distclean: distclean-am
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267 -rm -f Makefile
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268 distclean-am: clean-am distclean-generic
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269
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270 dvi: dvi-am
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276 info: info-am
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278 info-am:
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280 install-data-am:
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281
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282 install-dvi: install-dvi-am
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283
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284 install-exec-am:
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285
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286 install-html: install-html-am
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287
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288 install-info: install-info-am
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289
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290 install-man:
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291
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292 install-pdf: install-pdf-am
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293
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294 install-ps: install-ps-am
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295
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296 installcheck-am:
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297
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298 maintainer-clean: maintainer-clean-am
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299 -rm -f Makefile
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300 maintainer-clean-am: distclean-am maintainer-clean-generic
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301
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302 mostlyclean: mostlyclean-am
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303
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304 mostlyclean-am: mostlyclean-generic
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305
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306 pdf: pdf-am
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308 pdf-am:
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310 ps: ps-am
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312 ps-am:
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314 uninstall-am:
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315
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316 .MAKE: install-am install-strip
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317
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318 .PHONY: all all-am check check-am clean clean-generic distclean \
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319 distclean-generic distdir dvi dvi-am html html-am info info-am \
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320 install install-am install-data install-data-am install-dvi \
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321 install-dvi-am install-exec install-exec-am install-html \
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322 install-html-am install-info install-info-am install-man \
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323 install-pdf install-pdf-am install-ps install-ps-am \
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324 install-strip installcheck installcheck-am installdirs \
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325 maintainer-clean maintainer-clean-generic mostlyclean \
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326 mostlyclean-generic pdf pdf-am ps ps-am uninstall uninstall-am
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327
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328 # Tell versions [3.59,3.63) of GNU make to not export all variables.
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329 # Otherwise a system limit (for SysV at least) may be exceeded.
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330 .NOEXPORT:
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