Mercurial > repos > ximgchess > hexrd

comparison hexrd_find_orientations.xml @ 7:baba452d0613 draft

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"planemo upload for repository https://github.com/ximg-chess/galaxytools/tools/hexrd commit c6c9ce811a27cdee735c2eeac9f6a29f95d9ae90"
author ximgchess
date Tue, 04 Jan 2022 22:07:42 +0000
parents 164e881c40e2
children 4bb02acaaabc
comparison
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6:164e881c40e2 7:baba452d0613
23 23
24 <inputs> 24 <inputs>
25 <expand macro="find_orientations_config"/> 25 <expand macro="find_orientations_config"/>
26 </inputs> 26 </inputs>
27 <outputs> 27 <outputs>
28 <data name="config" format="hexrd.yml" label="${tool.name} on ${on_string}: ${active_material}_config.yml"/> 28 <data name="config" format="yaml" label="${tool.name} on ${on_string}: ${active_material}_config.yml"/>
29 <data name="log" format="txt" label="${tool.name} on ${on_string}: find-orientations_analysis_${active_material}.log"/> 29 <data name="log" format="txt" label="${tool.name} on ${on_string}: find-orientations_analysis_${active_material}.log"/>
30 <data name="ome_maps" format="hexrd.eta_ome.npz" label="${tool.name} on ${on_string}: analysis_${active_material}_eta-ome_maps.npz"/> 30 <data name="ome_maps" format="hexrd.eta_ome.npz" label="${tool.name} on ${on_string}: analysis_${active_material}_eta-ome_maps.npz"/>
31 <data name="score_orientations" format="hexrd.npz" label="${tool.name} on ${on_string}: scored_orientations_analysis_${active_material}.npz"/> 31 <data name="score_orientations" format="npz" label="${tool.name} on ${on_string}: scored_orientations_analysis_${active_material}.npz"/>
32 <data name="accepted_orientations" format="hexrd.accepted_orientations" label="${tool.name} on ${on_string}: accepted_orientations_analysis_${active_material}.dat"/> 32 <data name="accepted_orientations" format="tabular" label="${tool.name} on ${on_string}: accepted_orientations_analysis_${active_material}.dat"/>
33 <data name="grains" format="tabular" label="${tool.name} on ${on_string}: grains.out" from_work_dir="analysis/grains.out" /> 33 <data name="grains" format="tabular" label="${tool.name} on ${on_string}: grains.out" from_work_dir="analysis/grains.out" />
34 </outputs> 34 </outputs>
35 <tests> 35 <tests>
36 <test> 36 <test>
37 <param name="inputs" ftype="hexrd.npz" value="RUBY_0000-fc_GE.npz,RUBY_0001-fc_GE.npz,RUBY_0002-fc_GE.npz,RUBY_0003-fc_GE.npz,RUBY_0004-fc_GE.npz,RUBY_0005-fc_GE.npz"/> 37 <param name="inputs" ftype="hexrd.images.npz" value="RUBY_0000-fc_GE.npz,RUBY_0001-fc_GE.npz,RUBY_0002-fc_GE.npz,RUBY_0003-fc_GE.npz,RUBY_0004-fc_GE.npz,RUBY_0005-fc_GE.npz"/>
38 <conditional name="detector"> 38 <conditional name="detector">
39 <param name="panel_assignment" value="infer_from_name"/> 39 <param name="panel_assignment" value="infer_from_name"/>
40 </conditional> 40 </conditional>
41 <param name="instrument" ftype="hexrd.yml" value="ge_detector.yml"/> 41 <param name="instrument" ftype="yaml" value="ge_detector.yml"/>
42 <param name="material" ftype="hexrd.materials.h5" value="materials.h5"/> 42 <param name="material" ftype="hexrd.materials.h5" value="materials.h5"/>
43 <param name="active_material" value="ruby"/> 43 <param name="active_material" value="ruby"/>
44 <section name="orientation_maps"> 44 <section name="orientation_maps">
45 <param name="threshold" value="25"/> 45 <param name="threshold" value="25"/>
46 <param name="bin_frames" value="1"/> 46 <param name="bin_frames" value="1"/>