Mercurial > repos > ximgchess > hexrd

diff hexrd_find_orientations.xml @ 7:baba452d0613 draft

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"planemo upload for repository https://github.com/ximg-chess/galaxytools/tools/hexrd commit c6c9ce811a27cdee735c2eeac9f6a29f95d9ae90"
author ximgchess
date Tue, 04 Jan 2022 22:07:42 +0000
parents 164e881c40e2
children 4bb02acaaabc
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line diff
--- a/hexrd_find_orientations.xml	Thu Oct 14 18:03:22 2021 +0000
+++ b/hexrd_find_orientations.xml	Tue Jan 04 22:07:42 2022 +0000
@@ -25,20 +25,20 @@
         <expand macro="find_orientations_config"/> 
     </inputs>
     <outputs>
-        <data name="config" format="hexrd.yml" label="${tool.name} on ${on_string}: ${active_material}_config.yml"/>
+        <data name="config" format="yaml" label="${tool.name} on ${on_string}: ${active_material}_config.yml"/>
         <data name="log" format="txt" label="${tool.name} on ${on_string}: find-orientations_analysis_${active_material}.log"/>
         <data name="ome_maps" format="hexrd.eta_ome.npz" label="${tool.name} on ${on_string}: analysis_${active_material}_eta-ome_maps.npz"/>
-        <data name="score_orientations" format="hexrd.npz" label="${tool.name} on ${on_string}: scored_orientations_analysis_${active_material}.npz"/>
-        <data name="accepted_orientations" format="hexrd.accepted_orientations" label="${tool.name} on ${on_string}: accepted_orientations_analysis_${active_material}.dat"/>
+        <data name="score_orientations" format="npz" label="${tool.name} on ${on_string}: scored_orientations_analysis_${active_material}.npz"/>
+        <data name="accepted_orientations" format="tabular" label="${tool.name} on ${on_string}: accepted_orientations_analysis_${active_material}.dat"/>
         <data name="grains" format="tabular" label="${tool.name} on ${on_string}: grains.out" from_work_dir="analysis/grains.out" />
     </outputs>
     <tests>
         <test>
-            <param name="inputs" ftype="hexrd.npz" value="RUBY_0000-fc_GE.npz,RUBY_0001-fc_GE.npz,RUBY_0002-fc_GE.npz,RUBY_0003-fc_GE.npz,RUBY_0004-fc_GE.npz,RUBY_0005-fc_GE.npz"/>
+            <param name="inputs" ftype="hexrd.images.npz" value="RUBY_0000-fc_GE.npz,RUBY_0001-fc_GE.npz,RUBY_0002-fc_GE.npz,RUBY_0003-fc_GE.npz,RUBY_0004-fc_GE.npz,RUBY_0005-fc_GE.npz"/>
             <conditional name="detector">
                 <param name="panel_assignment" value="infer_from_name"/>
             </conditional>
-            <param name="instrument" ftype="hexrd.yml" value="ge_detector.yml"/>
+            <param name="instrument" ftype="yaml" value="ge_detector.yml"/>
             <param name="material" ftype="hexrd.materials.h5" value="materials.h5"/>
             <param name="active_material" value="ruby"/>
             <section name="orientation_maps">