annotate mytools/fastashuffle1.xml @ 12:7b8a5b55ee15

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author xuebing
date Fri, 16 Mar 2012 16:11:05 -0400
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1 <tool id="seqshuffle" name="shuffle sequences">
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2 <description>preserving mono-nucleotide frequency</description>
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3 <command>cat $input | fasta-shuffle-letters > $output </command>
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4 <inputs>
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5 <param name="input" type="data" format="fasta" label="Original FASTA sequence file"/>
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6 </inputs>
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7 <outputs>
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8 <data format="fasta" name="output" />
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9 </outputs>
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10 <help>
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11
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12 **Description**
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14 shuffle the position of nucleotides in each sequence, preserving the frequency of nucleotides in that sequence, but do not preserve di-nucleotide frequency.
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16 </help>
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17 </tool>