annotate tools/mytools/fimo_out/cisml.xml @ 3:33c067c3ae34

Deleted selected files
author xuebing
date Fri, 09 Mar 2012 19:47:53 -0500
parents 9071e359b9a3
children
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1 <?xml version="1.0" encoding="UTF-8" standalone="no"?>
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2 <?xml-stylesheet type="text/xsl" href="fimo-to-html.xsl"?>
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3 <!-- Begin document body -->
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4 <cis-element-search
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5 xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
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6 xsi:schemaLocation="http://zlab.bu.edu/schema/cisml cisml.xsd"
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7 xmlns="http://zlab.bu.edu/schema/cisml"
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8 xmlns:mem="http://noble.gs.washington.edu/meme"
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9 >
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10 <program-name>fimo</program-name>
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11 <parameters>
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12 <pattern-file>AATAAA.motif</pattern-file>
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13 <sequence-file>/Users/xuebing/Downloads/hotair-target.fa.fasta</sequence-file>
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14 <site-pvalue-cutoff>0.0001</site-pvalue-cutoff>
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15 <sequence-filtering on-off="off"/>
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16 </parameters>
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17 <pattern accession="AATAAA" name="AATAAA">
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18 <scanned-sequence accession="hg18_chr2_176729347_176730199_+" name="hg18_chr2_176729347_176730199_+">
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19 </scanned-sequence>
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20 <scanned-sequence accession="hg18_chr16_62574196_62575125_+" name="hg18_chr16_62574196_62575125_+">
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21 </scanned-sequence>
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22 <scanned-sequence accession="hg18_chr9_13935898_13936724_+" name="hg18_chr9_13935898_13936724_+">
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23 </scanned-sequence>
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24 <scanned-sequence accession="hg18_chr1_33901946_33902751_+" name="hg18_chr1_33901946_33902751_+">
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25 </scanned-sequence>
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26 <scanned-sequence accession="hg18_chr12_52645621_52646676_+" name="hg18_chr12_52645621_52646676_+">
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27 </scanned-sequence>
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28 <scanned-sequence accession="hg18_chr12_52642148_52644699_+" name="hg18_chr12_52642148_52644699_+">
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29 </scanned-sequence>
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30 <scanned-sequence accession="hg18_chr13_89656947_89657801_+" name="hg18_chr13_89656947_89657801_+">
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31 </scanned-sequence>
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32 <scanned-sequence accession="hg18_chr11_39335199_39336003_+" name="hg18_chr11_39335199_39336003_+">
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33 </scanned-sequence>
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34 <scanned-sequence accession="hg18_chr2_176860123_176860951_+" name="hg18_chr2_176860123_176860951_+">
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35 </scanned-sequence>
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36 <scanned-sequence accession="hg18_chr14_34946897_34947750_+" name="hg18_chr14_34946897_34947750_+">
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37 </scanned-sequence>
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38 <scanned-sequence accession="hg18_chr10_36709221_36710101_+" name="hg18_chr10_36709221_36710101_+">
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39 </scanned-sequence>
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40 <scanned-sequence accession="hg18_chr6_85734197_85734926_+" name="hg18_chr6_85734197_85734926_+">
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41 </scanned-sequence>
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42 <scanned-sequence accession="hg18_chr6_122208322_122209078_+" name="hg18_chr6_122208322_122209078_+">
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43 </scanned-sequence>
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44 <scanned-sequence accession="hg18_chrX_7721675_7722551_+" name="hg18_chrX_7721675_7722551_+">
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45 </scanned-sequence>
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46 <scanned-sequence accession="hg18_chr4_83118096_83118950_+" name="hg18_chr4_83118096_83118950_+">
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47 </scanned-sequence>
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48 <scanned-sequence accession="hg18_chr1_246386296_246387002_+" name="hg18_chr1_246386296_246387002_+">
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49 </scanned-sequence>
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50 <scanned-sequence accession="hg18_chrX_138845947_138846576_+" name="hg18_chrX_138845947_138846576_+">
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51 </scanned-sequence>
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52 <scanned-sequence accession="hg18_chr9_116983372_116983999_+" name="hg18_chr9_116983372_116983999_+">
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53 </scanned-sequence>
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54 <scanned-sequence accession="hg18_chr2_238501322_238502028_+" name="hg18_chr2_238501322_238502028_+">
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55 </scanned-sequence>
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56 <scanned-sequence accession="hg18_chr6_114316272_114316978_+" name="hg18_chr6_114316272_114316978_+">
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57 </scanned-sequence>
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58 <scanned-sequence accession="hg18_chr7_158117474_158118353_+" name="hg18_chr7_158117474_158118353_+">
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59 </scanned-sequence>
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60 <scanned-sequence accession="hg18_chr5_22844572_22845251_+" name="hg18_chr5_22844572_22845251_+">
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61 </scanned-sequence>
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62 <scanned-sequence accession="hg18_chr4_91055674_91056478_+" name="hg18_chr4_91055674_91056478_+">
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63 </scanned-sequence>
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64 <scanned-sequence accession="hg18_chr7_125039472_125040524_+" name="hg18_chr7_125039472_125040524_+">
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65 </scanned-sequence>
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66 <scanned-sequence accession="hg18_chr17_3131597_3132351_+" name="hg18_chr17_3131597_3132351_+">
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67 </scanned-sequence>
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68 <scanned-sequence accession="hg18_chr3_89426198_89426978_+" name="hg18_chr3_89426198_89426978_+">
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69 </scanned-sequence>
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70 <scanned-sequence accession="hg18_chr6_129312671_129313449_+" name="hg18_chr6_129312671_129313449_+">
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71 </scanned-sequence>
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72 <scanned-sequence accession="hg18_chr6_164194596_164195251_+" name="hg18_chr6_164194596_164195251_+">
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73 </scanned-sequence>
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74 <scanned-sequence accession="hg18_chr8_125414650_125415526_+" name="hg18_chr8_125414650_125415526_+">
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75 </scanned-sequence>
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76 <scanned-sequence accession="hg18_chr4_14310772_14311624_+" name="hg18_chr4_14310772_14311624_+">
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77 </scanned-sequence>
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78 <scanned-sequence accession="hg18_chr2_139554248_139555028_+" name="hg18_chr2_139554248_139555028_+">
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79 </scanned-sequence>
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80 <scanned-sequence accession="hg18_chr9_139033797_139034700_+" name="hg18_chr9_139033797_139034700_+">
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81 </scanned-sequence>
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82 <scanned-sequence accession="hg18_chr14_68633322_68634176_+" name="hg18_chr14_68633322_68634176_+">
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83 </scanned-sequence>
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84 <scanned-sequence accession="hg18_chr2_158385222_158385924_+" name="hg18_chr2_158385222_158385924_+">
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85 </scanned-sequence>
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86 <scanned-sequence accession="hg18_chr8_116426650_116427452_+" name="hg18_chr8_116426650_116427452_+">
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87 </scanned-sequence>
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88 <scanned-sequence accession="hg18_chr7_84196297_84196800_+" name="hg18_chr7_84196297_84196800_+">
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89 </scanned-sequence>
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90 <scanned-sequence accession="hg18_chr2_223306671_223307603_+" name="hg18_chr2_223306671_223307603_+">
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91 </scanned-sequence>
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92 <scanned-sequence accession="hg18_chr6_88542021_88542726_+" name="hg18_chr6_88542021_88542726_+">
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93 </scanned-sequence>
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94 <scanned-sequence accession="hg18_chr7_41749647_41750527_+" name="hg18_chr7_41749647_41750527_+">
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95 </scanned-sequence>
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96 <scanned-sequence accession="hg18_chr5_79587900_79588652_+" name="hg18_chr5_79587900_79588652_+">
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97 </scanned-sequence>
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98 <scanned-sequence accession="hg18_chr22_46247098_46247699_+" name="hg18_chr22_46247098_46247699_+">
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99 </scanned-sequence>
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100 <scanned-sequence accession="hg18_chrX_138599099_138599700_+" name="hg18_chrX_138599099_138599700_+">
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101 </scanned-sequence>
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102 <scanned-sequence accession="hg18_chr9_122338997_122339850_+" name="hg18_chr9_122338997_122339850_+">
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103 </scanned-sequence>
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104 <scanned-sequence accession="hg18_chr10_100364172_100364899_+" name="hg18_chr10_100364172_100364899_+">
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105 </scanned-sequence>
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106 <scanned-sequence accession="hg18_chr16_56911397_56912178_+" name="hg18_chr16_56911397_56912178_+">
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107 </scanned-sequence>
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108 <scanned-sequence accession="hg18_chr12_106504072_106504949_+" name="hg18_chr12_106504072_106504949_+">
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109 </scanned-sequence>
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110 <scanned-sequence accession="hg18_chr22_29762497_29763075_+" name="hg18_chr22_29762497_29763075_+">
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111 </scanned-sequence>
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112 <scanned-sequence accession="hg18_chr16_53264971_53265701_+" name="hg18_chr16_53264971_53265701_+">
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113 </scanned-sequence>
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114 <scanned-sequence accession="hg18_chr19_21070599_21071178_+" name="hg18_chr19_21070599_21071178_+">
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115 </scanned-sequence>
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116 <scanned-sequence accession="hg18_chr7_26956922_26957674_+" name="hg18_chr7_26956922_26957674_+">
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117 </scanned-sequence>
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118 <scanned-sequence accession="hg18_chr15_42115223_42116003_+" name="hg18_chr15_42115223_42116003_+">
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119 </scanned-sequence>
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120 <scanned-sequence accession="hg18_chr10_107863647_107864502_+" name="hg18_chr10_107863647_107864502_+">
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121 </scanned-sequence>
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122 <scanned-sequence accession="hg18_chr14_22790100_22790752_+" name="hg18_chr14_22790100_22790752_+">
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123 </scanned-sequence>
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124 <scanned-sequence accession="hg18_chr2_127342875_127343401_+" name="hg18_chr2_127342875_127343401_+">
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125 </scanned-sequence>
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126 <scanned-sequence accession="hg18_chr15_85018174_85018902_+" name="hg18_chr15_85018174_85018902_+">
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127 </scanned-sequence>
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128 <scanned-sequence accession="hg18_chr18_46079798_46080726_+" name="hg18_chr18_46079798_46080726_+">
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129 </scanned-sequence>
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130 <scanned-sequence accession="hg18_chr3_197829221_197830302_+" name="hg18_chr3_197829221_197830302_+">
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131 </scanned-sequence>
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132 <scanned-sequence accession="hg18_chr2_221803850_221804527_+" name="hg18_chr2_221803850_221804527_+">
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133 </scanned-sequence>
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134 <scanned-sequence accession="hg18_chr6_154018946_154019702_+" name="hg18_chr6_154018946_154019702_+">
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135 </scanned-sequence>
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136 <scanned-sequence accession="hg18_chr11_76969998_76970625_+" name="hg18_chr11_76969998_76970625_+">
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137 </scanned-sequence>
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138 <scanned-sequence accession="hg18_chr19_8433726_8434800_+" name="hg18_chr19_8433726_8434800_+">
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139 </scanned-sequence>
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140 <scanned-sequence accession="hg18_chr12_52646946_52647751_+" name="hg18_chr12_52646946_52647751_+">
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141 </scanned-sequence>
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142 <scanned-sequence accession="hg18_chr5_143530221_143531078_+" name="hg18_chr5_143530221_143531078_+">
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143 </scanned-sequence>
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144 <scanned-sequence accession="hg18_chr13_93995296_93995852_+" name="hg18_chr13_93995296_93995852_+">
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145 </scanned-sequence>
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146 <scanned-sequence accession="hg18_chr7_158199873_158200600_+" name="hg18_chr7_158199873_158200600_+">
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147 </scanned-sequence>
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148 <scanned-sequence accession="hg18_chr18_73432646_73433228_+" name="hg18_chr18_73432646_73433228_+">
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149 </scanned-sequence>
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150 <scanned-sequence accession="hg18_chr19_34446548_34447202_+" name="hg18_chr19_34446548_34447202_+">
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151 </scanned-sequence>
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152 <scanned-sequence accession="hg18_chr8_57991274_57991902_+" name="hg18_chr8_57991274_57991902_+">
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153 </scanned-sequence>
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parents:
diff changeset
1666 <scanned-sequence accession="hg18_chrY_11247425_11248952_+" name="hg18_chrY_11247425_11248952_+">
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parents:
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1667 </scanned-sequence>
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parents:
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1668 <scanned-sequence accession="hg18_chr1_1346473_1347026_+" name="hg18_chr1_1346473_1347026_+">
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parents:
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1669 </scanned-sequence>
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parents:
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1670 <scanned-sequence accession="hg18_chr10_39188896_39189328_+" name="hg18_chr10_39188896_39189328_+">
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parents:
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1671 </scanned-sequence>
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parents:
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1672 <scanned-sequence accession="hg18_chrY_12379246_12380027_+" name="hg18_chrY_12379246_12380027_+">
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parents:
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1673 </scanned-sequence>
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parents:
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1674 <scanned-sequence accession="hg18_chr4_49343647_49346153_+" name="hg18_chr4_49343647_49346153_+">
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parents:
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1675 </scanned-sequence>
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parents:
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1676 <scanned-sequence accession="hg18_chr4_49335596_49336473_+" name="hg18_chr4_49335596_49336473_+">
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parents:
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1677 </scanned-sequence>
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parents:
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1678 <scanned-sequence accession="hg18_chr20_62050197_62050899_+" name="hg18_chr20_62050197_62050899_+">
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parents:
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1679 </scanned-sequence>
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parents:
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1680 <scanned-sequence accession="hg18_chr4_49340971_49341478_+" name="hg18_chr4_49340971_49341478_+">
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parents:
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1681 </scanned-sequence>
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parents:
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1682 </pattern>
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parents:
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1683 </cis-element-search>