Mercurial > repos > xuebing > sharplabtool
annotate tools/emboss_5/emboss_banana.pl @ 0:9071e359b9a3
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author | xuebing |
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date | Fri, 09 Mar 2012 19:37:19 -0500 |
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rev | line source |
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0 | 1 #! /usr/bin/perl -w |
2 use strict; | |
3 | |
4 my $cmd_string = join (" ",@ARGV); | |
5 #my $cmd_string = "/home/djb396/temp/emboss/bin/banana -sequence /home/djb396/universe-prototype/test.fasta -outfile result.txt -graph png -goutfile results -auto"; | |
6 my $results = `$cmd_string`; | |
7 my @files = split("\n",$results); | |
8 foreach my $thisLine (@files) | |
9 { | |
10 if ($thisLine =~ /Created /i) | |
11 { | |
12 $thisLine =~ /[\w|\.]+$/; | |
13 $thisLine =$&; | |
14 print "outfile: $thisLine\n"; | |
15 } | |
16 } |