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1 <tool id="EMBOSS: chips10" name="chips" version="5.0.0">
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2 <description>Codon usage statistics</description>
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3 <requirements><requirement type="package" version="5.0.0">emboss</requirement></requirements>
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4 <command>chips -seqall $input1 -outfile $out_file1 -sum $sum -auto</command>
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5 <inputs>
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6 <param format="data" name="input1" type="data">
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7 <label>On query</label>
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8 </param>
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9 <param name="sum" type="select">
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10 <label>Sum codons over all sequences</label>
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11 <option value="yes">Yes</option>
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12 <option value="no">No</option>
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13 </param>
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14 </inputs>
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15 <outputs>
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16 <data format="chips" name="out_file1" />
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17 </outputs>
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18 <tests>
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19 <test>
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20 <param name="input1" value="2.fasta"/>
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21 <param name="sum" value="yes"/>
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22 <output name="out_file1" file="emboss_chips_out.chips"/>
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23 </test>
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24 </tests>
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25 <help>
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26 You can view the original documentation here_.
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27
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28 .. _here: http://emboss.sourceforge.net/apps/release/5.0/emboss/apps/chips.html
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29 </help>
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30 </tool> |
