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1 <tool id="ChangeCase" name="Change Case">
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2 <description> of selected columns</description>
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3 <command interpreter="perl">changeCase.pl $input "$cols" $delimiter $casing $out_file1</command>
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4 <inputs>
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5 <param name="input" format="txt" type="data" label="From"/>
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6 <param name="cols" size="10" type="text" value="c1,c2" label="Change case of columns"/>
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7 <param name="delimiter" type="select" label="Delimited by">
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8 <option value="TAB">Tab</option>
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9 <option value="SPACE">Whitespace</option>
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10 <option value="DOT">Dot</option>
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11 <option value="COMMA">Comma</option>
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12 <option value="DASH">Dash</option>
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13 <option value="UNDERSCORE">Underscore</option>
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14 <option value="PIPE">Pipe</option>
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15 </param>
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16 <param name="casing" type="select" label="To">
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17 <option value="up">Upper case</option>
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18 <option value="lo">Lower case</option>
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19 </param>
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20 </inputs>
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21 <outputs>
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22 <data format="tabular" name="out_file1" />
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23 </outputs>
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24 <tests>
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25 <test>
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26 <param name="input" value="1.txt" ftype="txt"/>
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27 <param name="cols" value="c1"/>
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28 <param name="delimiter" value="SPACE"/>
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29 <param name="casing" value="up"/>
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30 <output name="out_file1" file="changeCase_out1.tabular"/>
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31 </test>
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32 <test>
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33 <param name="input" value="1.bed" ftype="bed"/>
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34 <param name="cols" value="c1"/>
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35 <param name="delimiter" value="TAB"/>
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36 <param name="casing" value="up"/>
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37 <output name="out_file1" file="changeCase_out2.tabular"/>
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38 </test>
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39 </tests>
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40 <help>
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41
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42 .. class:: warningmark
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43
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44 **This tool breaks column assignments.** To re-establish column assignments run the tool and click on the pencil icon in the resulting history item.
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45
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46 .. class:: warningmark
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47
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48 The format of the resulting dataset from this tool is always tabular.
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49
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50 -----
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51
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52 **What it does**
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53
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54 This tool selects specified columns from a dataset and converts the values of those columns to upper or lower case.
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55
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56 - Columns are specified as **c1**, **c2**, and so on.
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57 - Columns can be specified in any order (e.g., **c2,c1,c6**)
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58
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59 -----
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60
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61 **Example**
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62
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63 Changing columns 1 and 3 ( delimited by Comma ) to upper case in::
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64
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65 apple,is,good
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66 windows,is,bad
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67
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68 will result in::
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69
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70 APPLE is GOOD
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71 WINDOWS is BAD
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72
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73 </help>
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74 </tool> |
