Mercurial > repos > xuebing > sharplabtool
annotate tools/mytools/convertEnsembl.xml @ 0:9071e359b9a3
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author | xuebing |
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date | Fri, 09 Mar 2012 19:37:19 -0500 |
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0 | 1 <tool id="convertens" name="convert ensembl"> |
2 <description>to ucsc</description> | |
3 <command interpreter="python">convertEnsembl.py $input $output $skip </command> | |
4 <inputs> | |
5 <param name="input" format="interval" type="data" label="Original file"/> | |
6 <param name="skip" size="10" type="integer" value="0" label="Number of beginning lines to skip"/> | |
7 </inputs> | |
8 <outputs> | |
9 <data format="input" name="output" /> | |
10 </outputs> | |
11 <help> | |
12 | |
13 **What it does** | |
14 | |
15 This tool convert ensembl based interval file to ucsc format: add 'chr' to chromosome number (column 1), and replace '1' and '-1' with '+' and '-' in column 6, respectively. | |
16 | |
17 </help> | |
18 </tool> |