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1 #!/usr/bin/env python
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2
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3 """
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4 Validate a dataset based on extension a metadata passed in on the
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5 command line. Outputs a binhex'd representation of the exceptions.
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6
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7 usage: %prog input output
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8 -m, --metadata=N: base64 pickeled metadata
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9 -x, --ext=N: extension as understood by galaxy
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10 """
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11
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12 import pkg_resources; pkg_resources.require( "bx-python" )
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13 from bx.cookbook import doc_optparse
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14
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15 from galaxy import model
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16 from fileinput import FileInput
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17 from galaxy import util
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18
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19 def main():
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20 options, args = doc_optparse.parse( __doc__ )
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21
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22 try:
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23 extension = options.ext
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24 except:
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25 doc_optparse.exception()
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26
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27 # create datatype
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28 data = model.Dataset( extension=extension, id=int( args[0] ) )
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29 data.file_path = "/home/ian/trunk/database/files/"
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30
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31 if options.metadata:
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32 data.metadata = util.string_to_object( options.metadata )
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33
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34 errors = data.datatype.validate( data )
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35 print util.object_to_string(errors)
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36
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37 if __name__ == "__main__":
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38 main()
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