annotate tools/data_source/yeastmine.xml @ 1:cdcb0ce84a1b

Uploaded
author xuebing
date Fri, 09 Mar 2012 19:45:15 -0500
parents 9071e359b9a3
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
9071e359b9a3 Uploaded
xuebing
parents:
diff changeset
1 <?xml version="1.0"?>
9071e359b9a3 Uploaded
xuebing
parents:
diff changeset
2 <tool name="YeastMine" id="yeastmine" tool_type="data_source">
9071e359b9a3 Uploaded
xuebing
parents:
diff changeset
3 <description>server</description>
9071e359b9a3 Uploaded
xuebing
parents:
diff changeset
4 <command interpreter="python">data_source.py $output $__app__.config.output_size_limit</command>
9071e359b9a3 Uploaded
xuebing
parents:
diff changeset
5 <inputs action="http://yeastmine.yeastgenome.org/yeastmine/begin.do" check_values="false" method="get">
9071e359b9a3 Uploaded
xuebing
parents:
diff changeset
6 <display>go to yeastMine server $GALAXY_URL</display>
9071e359b9a3 Uploaded
xuebing
parents:
diff changeset
7 </inputs>
9071e359b9a3 Uploaded
xuebing
parents:
diff changeset
8 <request_param_translation>
9071e359b9a3 Uploaded
xuebing
parents:
diff changeset
9 <request_param galaxy_name="data_type" remote_name="data_type" missing="auto" >
9071e359b9a3 Uploaded
xuebing
parents:
diff changeset
10 <value_translation>
9071e359b9a3 Uploaded
xuebing
parents:
diff changeset
11 <value galaxy_value="auto" remote_value="txt" /> <!-- intermine currently always provides 'txt', make this auto detect -->
9071e359b9a3 Uploaded
xuebing
parents:
diff changeset
12 </value_translation>
9071e359b9a3 Uploaded
xuebing
parents:
diff changeset
13 </request_param>
9071e359b9a3 Uploaded
xuebing
parents:
diff changeset
14 </request_param_translation>
9071e359b9a3 Uploaded
xuebing
parents:
diff changeset
15 <uihints minwidth="800"/>
9071e359b9a3 Uploaded
xuebing
parents:
diff changeset
16 <outputs>
9071e359b9a3 Uploaded
xuebing
parents:
diff changeset
17 <data name="output" format="txt" />
9071e359b9a3 Uploaded
xuebing
parents:
diff changeset
18 </outputs>
9071e359b9a3 Uploaded
xuebing
parents:
diff changeset
19 <options sanitize="False" refresh="True"/>
9071e359b9a3 Uploaded
xuebing
parents:
diff changeset
20 </tool>