Mercurial > repos > xuebing > sharplabtool
comparison tools/data_source/genbank.xml @ 0:9071e359b9a3
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author | xuebing |
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date | Fri, 09 Mar 2012 19:37:19 -0500 |
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-1:000000000000 | 0:9071e359b9a3 |
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1 <tool id="genbank" name="Connect to Genbank"> | |
2 <!-- <description>queries genbank</description> --> | |
3 <command interpreter="python">genbank.py $mode "$text" $output</command> | |
4 <inputs> | |
5 <param name="mode" type="select"> | |
6 <option value="nucleotide">nucleotide database</option> | |
7 <option value="protein">proteins database</option> | |
8 <label>Get sequences from the</label> | |
9 </param> | |
10 <param name="text" size="40" type="text" value="6273291"> | |
11 <label>with accession ID</label> | |
12 </param> | |
13 </inputs> | |
14 <outputs> | |
15 <data format="fasta" name="output" /> | |
16 </outputs> | |
17 <help> | |
18 At the moment this tool allows the following simple searches: | |
19 | |
20 - by GI: **51594135** | |
21 - by accession: **CF622840** | |
22 - using text: **human hbb1** (this feature is experimental) | |
23 </help> | |
24 | |
25 </tool> |