comparison tools/data_source/genbank.xml @ 0:9071e359b9a3

Uploaded
author xuebing
date Fri, 09 Mar 2012 19:37:19 -0500
parents
children
comparison
equal deleted inserted replaced
-1:000000000000 0:9071e359b9a3
1 <tool id="genbank" name="Connect to Genbank">
2 <!-- <description>queries genbank</description> -->
3 <command interpreter="python">genbank.py $mode "$text" $output</command>
4 <inputs>
5 <param name="mode" type="select">
6 <option value="nucleotide">nucleotide database</option>
7 <option value="protein">proteins database</option>
8 <label>Get sequences from the</label>
9 </param>
10 <param name="text" size="40" type="text" value="6273291">
11 <label>with accession ID</label>
12 </param>
13 </inputs>
14 <outputs>
15 <data format="fasta" name="output" />
16 </outputs>
17 <help>
18 At the moment this tool allows the following simple searches:
19
20 - by GI: **51594135**
21 - by accession: **CF622840**
22 - using text: **human hbb1** (this feature is experimental)
23 </help>
24
25 </tool>