diff tools/data_source/genbank.xml @ 0:9071e359b9a3

Uploaded
author xuebing
date Fri, 09 Mar 2012 19:37:19 -0500
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+++ b/tools/data_source/genbank.xml	Fri Mar 09 19:37:19 2012 -0500
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+<tool id="genbank" name="Connect to Genbank">
+<!--  <description>queries genbank</description> -->
+  <command interpreter="python">genbank.py $mode "$text" $output</command>
+  <inputs>
+    <param name="mode" type="select">
+      <option value="nucleotide">nucleotide database</option>
+      <option value="protein">proteins database</option>
+      <label>Get sequences from the</label>
+    </param>
+    <param name="text" size="40" type="text" value="6273291">
+      <label>with accession ID</label>
+    </param>   
+  </inputs>
+  <outputs>
+    <data format="fasta" name="output" />
+  </outputs>
+  <help>
+At the moment this tool allows the following simple searches:
+
+- by GI: **51594135**
+- by accession: **CF622840**
+- using text: **human hbb1** (this feature is experimental)
+  </help>
+
+</tool>
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