Mercurial > repos > xuebing > sharplabtool
diff tools/data_source/genbank.xml @ 0:9071e359b9a3
Uploaded
author | xuebing |
---|---|
date | Fri, 09 Mar 2012 19:37:19 -0500 |
parents | |
children |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tools/data_source/genbank.xml Fri Mar 09 19:37:19 2012 -0500 @@ -0,0 +1,25 @@ +<tool id="genbank" name="Connect to Genbank"> +<!-- <description>queries genbank</description> --> + <command interpreter="python">genbank.py $mode "$text" $output</command> + <inputs> + <param name="mode" type="select"> + <option value="nucleotide">nucleotide database</option> + <option value="protein">proteins database</option> + <label>Get sequences from the</label> + </param> + <param name="text" size="40" type="text" value="6273291"> + <label>with accession ID</label> + </param> + </inputs> + <outputs> + <data format="fasta" name="output" /> + </outputs> + <help> +At the moment this tool allows the following simple searches: + +- by GI: **51594135** +- by accession: **CF622840** +- using text: **human hbb1** (this feature is experimental) + </help> + +</tool> \ No newline at end of file