Mercurial > repos > xuebing > sharplabtool
comparison tools/data_source/genbank.xml @ 0:9071e359b9a3
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| author | xuebing |
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| date | Fri, 09 Mar 2012 19:37:19 -0500 |
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| -1:000000000000 | 0:9071e359b9a3 |
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| 1 <tool id="genbank" name="Connect to Genbank"> | |
| 2 <!-- <description>queries genbank</description> --> | |
| 3 <command interpreter="python">genbank.py $mode "$text" $output</command> | |
| 4 <inputs> | |
| 5 <param name="mode" type="select"> | |
| 6 <option value="nucleotide">nucleotide database</option> | |
| 7 <option value="protein">proteins database</option> | |
| 8 <label>Get sequences from the</label> | |
| 9 </param> | |
| 10 <param name="text" size="40" type="text" value="6273291"> | |
| 11 <label>with accession ID</label> | |
| 12 </param> | |
| 13 </inputs> | |
| 14 <outputs> | |
| 15 <data format="fasta" name="output" /> | |
| 16 </outputs> | |
| 17 <help> | |
| 18 At the moment this tool allows the following simple searches: | |
| 19 | |
| 20 - by GI: **51594135** | |
| 21 - by accession: **CF622840** | |
| 22 - using text: **human hbb1** (this feature is experimental) | |
| 23 </help> | |
| 24 | |
| 25 </tool> |