Mercurial > repos > xuebing > sharplabtool
comparison tools/emboss_5/emboss_wobble.xml @ 0:9071e359b9a3
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| author | xuebing |
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| date | Fri, 09 Mar 2012 19:37:19 -0500 |
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| -1:000000000000 | 0:9071e359b9a3 |
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| 1 <tool id="EMBOSS: wobble108" name="wobble" version="5.0.0"> | |
| 2 <description>Wobble base plot</description> | |
| 3 <requirements><requirement type="package" version="5.0.0">emboss</requirement></requirements> | |
| 4 <command interpreter="perl">emboss_single_outputfile_wrapper.pl wobble -sequence $input1 -graph png -goutfile $ofile1 -outfile $ofile2 -window "$window" -bases "$bases" -auto</command> | |
| 5 <inputs> | |
| 6 <param format="fasta" name="input1" type="data"> | |
| 7 <label>Sequence</label> | |
| 8 </param> | |
| 9 <param name="window" size="5" type="text" value="30"> | |
| 10 <label>Window size, in codons</label> | |
| 11 </param> | |
| 12 <param name="bases" size="6" type="text" value="GC"> | |
| 13 <label>Bases used</label> | |
| 14 </param> | |
| 15 </inputs> | |
| 16 <outputs> | |
| 17 <data format="png" name="ofile1" /> | |
| 18 <data format="wobble" name="ofile2" /> | |
| 19 </outputs> | |
| 20 <tests> | |
| 21 <test> | |
| 22 <param name="input1" value="2.fasta"/> | |
| 23 <param name="window" value="30"/> | |
| 24 <param name="bases" value="GC"/> | |
| 25 <output name="ofile2" file="emboss_wobble_out.wobble"/> | |
| 26 </test> | |
| 27 </tests> | |
| 28 <help> | |
| 29 | |
| 30 .. class:: warningmark | |
| 31 | |
| 32 The input dataset needs to be sequences. | |
| 33 | |
| 34 ----- | |
| 35 | |
| 36 You can view the original documentation here_. | |
| 37 | |
| 38 .. _here: http://emboss.sourceforge.net/apps/release/5.0/emboss/apps/wobble.html | |
| 39 </help> | |
| 40 </tool> |