Mercurial > repos > xuebing > sharplabtool
diff tools/emboss_5/emboss_wobble.xml @ 0:9071e359b9a3
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author | xuebing |
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date | Fri, 09 Mar 2012 19:37:19 -0500 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tools/emboss_5/emboss_wobble.xml Fri Mar 09 19:37:19 2012 -0500 @@ -0,0 +1,40 @@ +<tool id="EMBOSS: wobble108" name="wobble" version="5.0.0"> + <description>Wobble base plot</description> + <requirements><requirement type="package" version="5.0.0">emboss</requirement></requirements> + <command interpreter="perl">emboss_single_outputfile_wrapper.pl wobble -sequence $input1 -graph png -goutfile $ofile1 -outfile $ofile2 -window "$window" -bases "$bases" -auto</command> + <inputs> + <param format="fasta" name="input1" type="data"> + <label>Sequence</label> + </param> + <param name="window" size="5" type="text" value="30"> + <label>Window size, in codons</label> + </param> + <param name="bases" size="6" type="text" value="GC"> + <label>Bases used</label> + </param> + </inputs> + <outputs> + <data format="png" name="ofile1" /> + <data format="wobble" name="ofile2" /> + </outputs> + <tests> + <test> + <param name="input1" value="2.fasta"/> + <param name="window" value="30"/> + <param name="bases" value="GC"/> + <output name="ofile2" file="emboss_wobble_out.wobble"/> + </test> + </tests> + <help> + +.. class:: warningmark + +The input dataset needs to be sequences. + +----- + + You can view the original documentation here_. + + .. _here: http://emboss.sourceforge.net/apps/release/5.0/emboss/apps/wobble.html + </help> +</tool>