Mercurial > repos > xuebing > sharplabtool
comparison tools/human_genome_variation/lps_tool_wrapper.sh @ 0:9071e359b9a3
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| author | xuebing |
|---|---|
| date | Fri, 09 Mar 2012 19:37:19 -0500 |
| parents | |
| children |
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| -1:000000000000 | 0:9071e359b9a3 |
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| 1 #!/usr/bin/env bash | |
| 2 # script for execution of deployed applications | |
| 3 # | |
| 4 # Sets up the MCR environment for the current $ARCH and executes | |
| 5 # the specified command. | |
| 6 # | |
| 7 | |
| 8 export PATH=$PATH:$(dirname $0) | |
| 9 | |
| 10 MCRROOT=${MCRROOT:-/galaxy/software/linux2.6-x86_64/bin/MCR-7.11/v711} | |
| 11 MWE_ARCH=glnxa64 | |
| 12 | |
| 13 if [ "$MWE_ARCH" = "sol64" ] ; then | |
| 14 LD_LIBRARY_PATH=.:/usr/lib/lwp:${MCRROOT}/runtime/glnxa64 | |
| 15 else | |
| 16 LD_LIBRARY_PATH=.:${MCRROOT}/runtime/glnxa64 | |
| 17 fi | |
| 18 | |
| 19 LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/bin/glnxa64 | |
| 20 LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/sys/os/glnxa64 | |
| 21 | |
| 22 if [ "$MWE_ARCH" = "maci" -o "$MWE_ARCH" = "maci64" ]; then | |
| 23 DYLD_LIBRARY_PATH=${DYLD_LIBRARY_PATH}:/System/Library/Frameworks/JavaVM.framework/JavaVM:/System/Library/Frameworks/JavaVM.framework/Libraries | |
| 24 else | |
| 25 MCRJRE=${MCRROOT}/sys/java/jre/glnxa64/jre/lib/amd64 | |
| 26 LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/native_threads | |
| 27 LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/server | |
| 28 LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/client | |
| 29 LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE} | |
| 30 fi | |
| 31 | |
| 32 XAPPLRESDIR=${MCRROOT}/X11/app-defaults | |
| 33 | |
| 34 export LD_LIBRARY_PATH XAPPLRESDIR | |
| 35 | |
| 36 lps_tool $* | |
| 37 | |
| 38 exit 0 |