Mercurial > repos > xuebing > sharplabtool
view tools/human_genome_variation/lps_tool_wrapper.sh @ 0:9071e359b9a3
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author | xuebing |
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date | Fri, 09 Mar 2012 19:37:19 -0500 |
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#!/usr/bin/env bash # script for execution of deployed applications # # Sets up the MCR environment for the current $ARCH and executes # the specified command. # export PATH=$PATH:$(dirname $0) MCRROOT=${MCRROOT:-/galaxy/software/linux2.6-x86_64/bin/MCR-7.11/v711} MWE_ARCH=glnxa64 if [ "$MWE_ARCH" = "sol64" ] ; then LD_LIBRARY_PATH=.:/usr/lib/lwp:${MCRROOT}/runtime/glnxa64 else LD_LIBRARY_PATH=.:${MCRROOT}/runtime/glnxa64 fi LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/bin/glnxa64 LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/sys/os/glnxa64 if [ "$MWE_ARCH" = "maci" -o "$MWE_ARCH" = "maci64" ]; then DYLD_LIBRARY_PATH=${DYLD_LIBRARY_PATH}:/System/Library/Frameworks/JavaVM.framework/JavaVM:/System/Library/Frameworks/JavaVM.framework/Libraries else MCRJRE=${MCRROOT}/sys/java/jre/glnxa64/jre/lib/amd64 LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/native_threads LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/server LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/client LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE} fi XAPPLRESDIR=${MCRROOT}/X11/app-defaults export LD_LIBRARY_PATH XAPPLRESDIR lps_tool $* exit 0