Mercurial > repos > xuebing > sharplabtool
comparison tools/maf/maf_limit_size.xml @ 0:9071e359b9a3
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| author | xuebing |
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| date | Fri, 09 Mar 2012 19:37:19 -0500 |
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| -1:000000000000 | 0:9071e359b9a3 |
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| 1 <tool id="maf_limit_size1" name="Filter MAF blocks" version="1.0.1"> | |
| 2 <description>by Size</description> | |
| 3 <command interpreter="python">maf_limit_size.py $input1 $out_file1 $min_size $max_size</command> | |
| 4 <inputs> | |
| 5 <page> | |
| 6 <param format="maf" name="input1" label="MAF File" type="data"/> | |
| 7 <param name="min_size" label="Minimum Size" value="0" type="integer"/> | |
| 8 <param name="max_size" label="Maximum Size" value="0" type="integer" help="A maximum size less than 1 indicates no limit"/> | |
| 9 </page> | |
| 10 </inputs> | |
| 11 <outputs> | |
| 12 <data format="maf" name="out_file1" /> | |
| 13 </outputs> | |
| 14 <tests> | |
| 15 <test> | |
| 16 <param name="input1" value="3.maf" ftype="maf" /> | |
| 17 <param name="min_size" value="0"/> | |
| 18 <param name="max_size" value="0"/> | |
| 19 <output name="out_file1" file="maf_limit_size1_out.maf" /> | |
| 20 </test> | |
| 21 </tests> | |
| 22 <help> | |
| 23 | |
| 24 **What it does** | |
| 25 | |
| 26 This tool takes a MAF file and a size range and extracts the MAF blocks which fall within the specified range. | |
| 27 | |
| 28 ------ | |
| 29 | |
| 30 **Citation** | |
| 31 | |
| 32 If you use this tool, please cite `Blankenberg D, Taylor J, Nekrutenko A; The Galaxy Team. Making whole genome multiple alignments usable for biologists. Bioinformatics. 2011 Sep 1;27(17):2426-2428. <http://www.ncbi.nlm.nih.gov/pubmed/21775304>`_ | |
| 33 | |
| 34 | |
| 35 </help> | |
| 36 </tool> |