Mercurial > repos > xuebing > sharplabtool
comparison mytools/fimo2bed.xml @ 7:f0dc65e7f6c0
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| author | xuebing |
|---|---|
| date | Fri, 09 Mar 2012 19:59:07 -0500 |
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| 6:094f377db4e5 | 7:f0dc65e7f6c0 |
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| 1 <tool id="fimo2bed" name="fimo-to-bed"> | |
| 2 <description>convert FIMO output to BED</description> | |
| 3 <command interpreter="python">fimo2bed.py $input $rc > $output</command> | |
| 4 <inputs> | |
| 5 <param name="input" format="txt" type="data" label="FIMO output file"/> | |
| 6 <param name="rc" label="Check if the sequences are reverse complement" type="boolean" truevalue="rc" falsevalue="none" checked="False"/> | |
| 7 </inputs> | |
| 8 <outputs> | |
| 9 <data format="bed" name="output" /> | |
| 10 </outputs> | |
| 11 <help> | |
| 12 | |
| 13 Only works if your original FIMO input fasta sequences have ids like:: | |
| 14 | |
| 15 mm9_chr15_99358448_99360448_- | |
| 16 | |
| 17 | |
| 18 </help> | |
| 19 </tool> |