Mercurial > repos > xuebing > sharplabtool
diff mytools/fimo2bed.xml @ 7:f0dc65e7f6c0
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author | xuebing |
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date | Fri, 09 Mar 2012 19:59:07 -0500 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/mytools/fimo2bed.xml Fri Mar 09 19:59:07 2012 -0500 @@ -0,0 +1,19 @@ +<tool id="fimo2bed" name="fimo-to-bed"> + <description>convert FIMO output to BED</description> + <command interpreter="python">fimo2bed.py $input $rc > $output</command> + <inputs> + <param name="input" format="txt" type="data" label="FIMO output file"/> + <param name="rc" label="Check if the sequences are reverse complement" type="boolean" truevalue="rc" falsevalue="none" checked="False"/> + </inputs> + <outputs> + <data format="bed" name="output" /> + </outputs> + <help> + + Only works if your original FIMO input fasta sequences have ids like:: + + mm9_chr15_99358448_99360448_- + + + </help> +</tool>