diff tools/emboss_5/emboss_cusp.xml @ 0:9071e359b9a3

Uploaded
author xuebing
date Fri, 09 Mar 2012 19:37:19 -0500
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tools/emboss_5/emboss_cusp.xml	Fri Mar 09 19:37:19 2012 -0500
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+<tool id="EMBOSS: cusp17" name="cusp" version="5.0.0">
+  <description>Create a codon usage table</description>
+  <requirements><requirement type="package" version="5.0.0">emboss</requirement></requirements>
+  <command>cusp -sequence $input1 -outfile $out_file1 -auto</command>
+  <inputs>
+    <param format="fasta" name="input1" type="data">
+      <label>On query</label>
+    </param>
+  </inputs>
+  <outputs>
+    <data format="cusp" name="out_file1" />
+  </outputs>
+  <tests>
+    <test>
+      <param name="input1" value="2.fasta"/>
+      <output name="out_file1" file="emboss_cusp_out.cusp"/>
+    </test>
+  </tests>
+  <help>
+.. class:: warningmark
+
+The input dataset needs to be sequences.
+
+-----
+
+    You can view the original documentation here_.
+    
+    .. _here: http://emboss.sourceforge.net/apps/release/5.0/emboss/apps/cusp.html
+  </help>
+</tool>