<tool id="EMBOSS: cusp17" name="cusp" version="5.0.0">
  <description>Create a codon usage table</description>
  <requirements><requirement type="package" version="5.0.0">emboss</requirement></requirements>
  <command>cusp -sequence $input1 -outfile $out_file1 -auto</command>
  <inputs>
    <param format="fasta" name="input1" type="data">
      <label>On query</label>
    </param>
  </inputs>
  <outputs>
    <data format="cusp" name="out_file1" />
  </outputs>
  <tests>
    <test>
      <param name="input1" value="2.fasta"/>
      <output name="out_file1" file="emboss_cusp_out.cusp"/>
    </test>
  </tests>
  <help>
.. class:: warningmark

The input dataset needs to be sequences.

-----

    You can view the original documentation here_.
    
    .. _here: http://emboss.sourceforge.net/apps/release/5.0/emboss/apps/cusp.html
  </help>
</tool>