Mercurial > repos > xuebing > sharplabtool
diff tools/emboss_5/emboss_infoseq.xml @ 0:9071e359b9a3
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author | xuebing |
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date | Fri, 09 Mar 2012 19:37:19 -0500 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tools/emboss_5/emboss_infoseq.xml Fri Mar 09 19:37:19 2012 -0500 @@ -0,0 +1,76 @@ +<tool id="EMBOSS: infoseq46" name="infoseq" version="5.0.0"> + <!-- info contains file information always --> + <description>Displays some simple information about sequences</description> + <requirements><requirement type="package" version="5.0.0">emboss</requirement></requirements> + <command>infoseq -sequence $input1 -outfile $out_file1 -html $html_out1 -heading $heading -usa $usa -name $disname -accession $accession -gi $gi -version $version -type $type -length $length -pgc + $pgc -description $description -auto</command> + <inputs> + <param format="data" name="input1" type="data"> + <label>Sequences</label> + </param> + <param name="html_out1" type="select"> + <label>Format output as an HTML table</label> + <option value="no">No</option> + <option value="yes">Yes</option> + </param> + <param name="heading" type="select"> + <label>Display column headings</label> + <option value="yes">Yes</option> + <option value="no">No</option> + </param> + <param name="usa" type="select"> + <label>Display the USA of the sequence</label> + <option value="yes">Yes</option> + <option value="no">No</option> + </param> + <param name="disname" type="select"> + <label>Display 'name' column</label> + <option value="yes">Yes</option> + <option value="no">No</option> + </param> + <param name="accession" type="select"> + <label>Display 'accession' column</label> + <option value="yes">Yes</option> + <option value="no">No</option> + </param> + <param name="gi" type="select"> + <label>Display 'GI' column</label> + <option value="no">No</option> + <option value="yes">Yes</option> + </param> + <param name="version" type="select"> + <label>Display 'version' column</label> + <option value="no">No</option> + <option value="yes">Yes</option> + </param> + <param name="type" type="select"> + <label>Display 'type' column</label> + <option value="yes">Yes</option> + <option value="no">No</option> + </param> + <param name="length" type="select"> + <label>Display 'length' column</label> + <option value="yes">Yes</option> + <option value="no">No</option> + </param> + <param name="pgc" type="select"> + <label>Display 'percent GC content' column</label> + <option value="yes">Yes</option> + <option value="no">No</option> + </param> + <param name="description" type="select"> + <label>Display 'description' column</label> + <option value="yes">Yes</option> + <option value="no">No</option> + </param> + </inputs> + <outputs> + <data format="txt" name="out_file1" /> + </outputs> + <code file="emboss_format_corrector.py" /> + <help> + You can view the original documentation here_. + + .. _here: http://emboss.sourceforge.net/apps/release/5.0/emboss/apps/infoseq.html + </help> +</tool> \ No newline at end of file