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1 <tool id="EMBOSS: infoseq46" name="infoseq" version="5.0.0">
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2 <!-- info contains file information always -->
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3 <description>Displays some simple information about sequences</description>
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4 <requirements><requirement type="package" version="5.0.0">emboss</requirement></requirements>
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5 <command>infoseq -sequence $input1 -outfile $out_file1 -html $html_out1 -heading $heading -usa $usa -name $disname -accession $accession -gi $gi -version $version -type $type -length $length -pgc
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6 $pgc -description $description -auto</command>
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7 <inputs>
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8 <param format="data" name="input1" type="data">
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9 <label>Sequences</label>
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10 </param>
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11 <param name="html_out1" type="select">
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12 <label>Format output as an HTML table</label>
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13 <option value="no">No</option>
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14 <option value="yes">Yes</option>
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15 </param>
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16 <param name="heading" type="select">
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17 <label>Display column headings</label>
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18 <option value="yes">Yes</option>
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19 <option value="no">No</option>
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20 </param>
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21 <param name="usa" type="select">
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22 <label>Display the USA of the sequence</label>
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23 <option value="yes">Yes</option>
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24 <option value="no">No</option>
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25 </param>
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26 <param name="disname" type="select">
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27 <label>Display 'name' column</label>
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28 <option value="yes">Yes</option>
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29 <option value="no">No</option>
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30 </param>
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31 <param name="accession" type="select">
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32 <label>Display 'accession' column</label>
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33 <option value="yes">Yes</option>
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34 <option value="no">No</option>
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35 </param>
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36 <param name="gi" type="select">
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37 <label>Display 'GI' column</label>
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38 <option value="no">No</option>
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39 <option value="yes">Yes</option>
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40 </param>
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41 <param name="version" type="select">
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42 <label>Display 'version' column</label>
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43 <option value="no">No</option>
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44 <option value="yes">Yes</option>
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45 </param>
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46 <param name="type" type="select">
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47 <label>Display 'type' column</label>
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48 <option value="yes">Yes</option>
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49 <option value="no">No</option>
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50 </param>
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51 <param name="length" type="select">
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52 <label>Display 'length' column</label>
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53 <option value="yes">Yes</option>
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54 <option value="no">No</option>
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55 </param>
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56 <param name="pgc" type="select">
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57 <label>Display 'percent GC content' column</label>
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58 <option value="yes">Yes</option>
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59 <option value="no">No</option>
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60 </param>
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61 <param name="description" type="select">
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62 <label>Display 'description' column</label>
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63 <option value="yes">Yes</option>
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64 <option value="no">No</option>
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65 </param>
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66 </inputs>
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67 <outputs>
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68 <data format="txt" name="out_file1" />
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69 </outputs>
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70 <code file="emboss_format_corrector.py" />
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71 <help>
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72 You can view the original documentation here_.
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73
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74 .. _here: http://emboss.sourceforge.net/apps/release/5.0/emboss/apps/infoseq.html
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75 </help>
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76 </tool> |
