--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tools/emboss_5/emboss_preg.xml	Fri Mar 09 19:37:19 2012 -0500
@@ -0,0 +1,21 @@
+<tool id="EMBOSS: preg78" name="preg" version="5.0.0">
+  <description>Regular expression search of a protein sequence</description>
+  <requirements><requirement type="package" version="5.0.0">emboss</requirement></requirements>
+  <command>preg -sequence $input1 -outfile $out_file1 -pattern "$pattern" -auto</command>
+  <inputs>
+    <param format="data" name="input1" type="data">
+      <label>Sequence 1</label>
+    </param>
+    <param name="pattern" size="50" type="text" value="(ACD)">
+      <label>Regular expression pattern</label>
+    </param>
+  </inputs>
+  <outputs>
+    <data format="preg" name="out_file1" />
+  </outputs>
+  <help>
+    You can view the original documentation here_.
+    
+    .. _here: http://emboss.sourceforge.net/apps/release/5.0/emboss/apps/preg.html
+  </help>
+</tool>
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