Mercurial > repos > xuebing > sharplabtool

diff tools/human_genome_variation/pass_wrapper.sh @ 0:9071e359b9a3

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author xuebing
date Fri, 09 Mar 2012 19:37:19 -0500
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tools/human_genome_variation/pass_wrapper.sh	Fri Mar 09 19:37:19 2012 -0500
@@ -0,0 +1,13 @@
+#!/usr/bin/env bash
+
+export PATH=$PATH:$(dirname $0)
+
+input=$1
+min_window=$2
+max_window=$3
+false_num=$4
+output=$5
+
+pass "$input" "$min_window" "$max_window" "$false_num" "$output" >/dev/null
+sed -i -e 's/\t\t*/\t/g' "$output"
+