Mercurial > repos > xuebing > sharplabtool

diff fastqdump.xml @ 14:76e1b1b21cce default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Deleted selected files
author xuebing
date Tue, 13 Mar 2012 19:05:10 -0400
parents 292186c14b08
children
line wrap: on
line diff
--- a/fastqdump.xml	Sat Mar 10 08:17:36 2012 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,18 +0,0 @@
-<tool id="fastqdump" name="fastq-dump">
-  <description>convert SRA to FASTQ</description>
-  <command>/Users/xuebing/tools/sratoolkit.2.1.9-mac32/fastq-dump -A $input -M $minReadLen -Z > $out_file1 </command>
-  <inputs>
-    <param name="input" format="sra" type="data" label="Original file (SRA)"/>
-    <param name="minReadLen" size="10" type="integer" value="10" label="minimum read length to output"/>
-  </inputs>
-  <outputs>
-    <data format="fastq" name="out_file1" />
-  </outputs>
-  <help>
-
-**What it does**
-
-This is a wrapper of the fastq-dump tool from sra-toolkit. See http://trace.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?view=software 
-
-  </help>
-</tool>