Mercurial > repos > xuebing > sharplabtool
view tools/maf/maf_limit_size.xml @ 0:9071e359b9a3
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author | xuebing |
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date | Fri, 09 Mar 2012 19:37:19 -0500 |
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<tool id="maf_limit_size1" name="Filter MAF blocks" version="1.0.1"> <description>by Size</description> <command interpreter="python">maf_limit_size.py $input1 $out_file1 $min_size $max_size</command> <inputs> <page> <param format="maf" name="input1" label="MAF File" type="data"/> <param name="min_size" label="Minimum Size" value="0" type="integer"/> <param name="max_size" label="Maximum Size" value="0" type="integer" help="A maximum size less than 1 indicates no limit"/> </page> </inputs> <outputs> <data format="maf" name="out_file1" /> </outputs> <tests> <test> <param name="input1" value="3.maf" ftype="maf" /> <param name="min_size" value="0"/> <param name="max_size" value="0"/> <output name="out_file1" file="maf_limit_size1_out.maf" /> </test> </tests> <help> **What it does** This tool takes a MAF file and a size range and extracts the MAF blocks which fall within the specified range. ------ **Citation** If you use this tool, please cite `Blankenberg D, Taylor J, Nekrutenko A; The Galaxy Team. Making whole genome multiple alignments usable for biologists. Bioinformatics. 2011 Sep 1;27(17):2426-2428. <http://www.ncbi.nlm.nih.gov/pubmed/21775304>`_ </help> </tool>