annotate spliceJunctions.as @ 0:f493979f1408 draft default tip

planemo upload for repository https://github.com/Yating-L/hubarchivecreator-test commit 48b59e91e2dcc2e97735ee35d587960cbfbce932-dirty
author yating-l
date Wed, 21 Dec 2016 12:13:04 -0500
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
f493979f1408 planemo upload for repository https://github.com/Yating-L/hubarchivecreator-test commit 48b59e91e2dcc2e97735ee35d587960cbfbce932-dirty
yating-l
parents:
diff changeset
1 table spliceJunctions
f493979f1408 planemo upload for repository https://github.com/Yating-L/hubarchivecreator-test commit 48b59e91e2dcc2e97735ee35d587960cbfbce932-dirty
yating-l
parents:
diff changeset
2 "Predicted splice junctions"
f493979f1408 planemo upload for repository https://github.com/Yating-L/hubarchivecreator-test commit 48b59e91e2dcc2e97735ee35d587960cbfbce932-dirty
yating-l
parents:
diff changeset
3 (
f493979f1408 planemo upload for repository https://github.com/Yating-L/hubarchivecreator-test commit 48b59e91e2dcc2e97735ee35d587960cbfbce932-dirty
yating-l
parents:
diff changeset
4 string chrom; "Reference sequence chromosome or scaffold"
f493979f1408 planemo upload for repository https://github.com/Yating-L/hubarchivecreator-test commit 48b59e91e2dcc2e97735ee35d587960cbfbce932-dirty
yating-l
parents:
diff changeset
5 uint chromStart; "Start position in chromosome"
f493979f1408 planemo upload for repository https://github.com/Yating-L/hubarchivecreator-test commit 48b59e91e2dcc2e97735ee35d587960cbfbce932-dirty
yating-l
parents:
diff changeset
6 uint chromEnd; "End position in chromosome"
f493979f1408 planemo upload for repository https://github.com/Yating-L/hubarchivecreator-test commit 48b59e91e2dcc2e97735ee35d587960cbfbce932-dirty
yating-l
parents:
diff changeset
7 string name; "Name of item"
f493979f1408 planemo upload for repository https://github.com/Yating-L/hubarchivecreator-test commit 48b59e91e2dcc2e97735ee35d587960cbfbce932-dirty
yating-l
parents:
diff changeset
8 uint score; "Score from 0-1000"
f493979f1408 planemo upload for repository https://github.com/Yating-L/hubarchivecreator-test commit 48b59e91e2dcc2e97735ee35d587960cbfbce932-dirty
yating-l
parents:
diff changeset
9 char[1] strand; "+ or -"
f493979f1408 planemo upload for repository https://github.com/Yating-L/hubarchivecreator-test commit 48b59e91e2dcc2e97735ee35d587960cbfbce932-dirty
yating-l
parents:
diff changeset
10 uint thickStart; "Start of where display should be thick (start codon)"
f493979f1408 planemo upload for repository https://github.com/Yating-L/hubarchivecreator-test commit 48b59e91e2dcc2e97735ee35d587960cbfbce932-dirty
yating-l
parents:
diff changeset
11 uint thickEnd; "End of where display should be thick (stop codon)"
f493979f1408 planemo upload for repository https://github.com/Yating-L/hubarchivecreator-test commit 48b59e91e2dcc2e97735ee35d587960cbfbce932-dirty
yating-l
parents:
diff changeset
12 uint reserved; "Used as itemRgb as of 2004-11-22"
f493979f1408 planemo upload for repository https://github.com/Yating-L/hubarchivecreator-test commit 48b59e91e2dcc2e97735ee35d587960cbfbce932-dirty
yating-l
parents:
diff changeset
13 int blockCount; "Number of blocks"
f493979f1408 planemo upload for repository https://github.com/Yating-L/hubarchivecreator-test commit 48b59e91e2dcc2e97735ee35d587960cbfbce932-dirty
yating-l
parents:
diff changeset
14 int[blockCount] blockSizes; "Comma separated list of block sizes"
f493979f1408 planemo upload for repository https://github.com/Yating-L/hubarchivecreator-test commit 48b59e91e2dcc2e97735ee35d587960cbfbce932-dirty
yating-l
parents:
diff changeset
15 int[blockCount] chromStarts; "Start positions relative to chromStart"
f493979f1408 planemo upload for repository https://github.com/Yating-L/hubarchivecreator-test commit 48b59e91e2dcc2e97735ee35d587960cbfbce932-dirty
yating-l
parents:
diff changeset
16 uint junctionScore; "Number of reads supporting the splice junction"
f493979f1408 planemo upload for repository https://github.com/Yating-L/hubarchivecreator-test commit 48b59e91e2dcc2e97735ee35d587960cbfbce932-dirty
yating-l
parents:
diff changeset
17 )