annotate test-data/psl/__main__.log @ 0:f493979f1408 draft default tip

planemo upload for repository https://github.com/Yating-L/hubarchivecreator-test commit 48b59e91e2dcc2e97735ee35d587960cbfbce932-dirty
author yating-l
date Wed, 21 Dec 2016 12:13:04 -0500
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f493979f1408 planemo upload for repository https://github.com/Yating-L/hubarchivecreator-test commit 48b59e91e2dcc2e97735ee35d587960cbfbce932-dirty
yating-l
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1 DEBUG:root:#### Welcome in HubArchiveCreator Debug Mode ####
f493979f1408 planemo upload for repository https://github.com/Yating-L/hubarchivecreator-test commit 48b59e91e2dcc2e97735ee35d587960cbfbce932-dirty
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2
f493979f1408 planemo upload for repository https://github.com/Yating-L/hubarchivecreator-test commit 48b59e91e2dcc2e97735ee35d587960cbfbce932-dirty
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3 DEBUG:root:Calling faToTwoBit:
f493979f1408 planemo upload for repository https://github.com/Yating-L/hubarchivecreator-test commit 48b59e91e2dcc2e97735ee35d587960cbfbce932-dirty
yating-l
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4 DEBUG:root:---------
f493979f1408 planemo upload for repository https://github.com/Yating-L/hubarchivecreator-test commit 48b59e91e2dcc2e97735ee35d587960cbfbce932-dirty
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5 DEBUG:root:
f493979f1408 planemo upload for repository https://github.com/Yating-L/hubarchivecreator-test commit 48b59e91e2dcc2e97735ee35d587960cbfbce932-dirty
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6 DEBUG:root:Calling twoBitInfo:
f493979f1408 planemo upload for repository https://github.com/Yating-L/hubarchivecreator-test commit 48b59e91e2dcc2e97735ee35d587960cbfbce932-dirty
yating-l
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7 DEBUG:root:---------
f493979f1408 planemo upload for repository https://github.com/Yating-L/hubarchivecreator-test commit 48b59e91e2dcc2e97735ee35d587960cbfbce932-dirty
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8 DEBUG:root:
f493979f1408 planemo upload for repository https://github.com/Yating-L/hubarchivecreator-test commit 48b59e91e2dcc2e97735ee35d587960cbfbce932-dirty
yating-l
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9 DEBUG:root:Calling sort:
f493979f1408 planemo upload for repository https://github.com/Yating-L/hubarchivecreator-test commit 48b59e91e2dcc2e97735ee35d587960cbfbce932-dirty
yating-l
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10 DEBUG:root:---------
f493979f1408 planemo upload for repository https://github.com/Yating-L/hubarchivecreator-test commit 48b59e91e2dcc2e97735ee35d587960cbfbce932-dirty
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11 DEBUG:root:
f493979f1408 planemo upload for repository https://github.com/Yating-L/hubarchivecreator-test commit 48b59e91e2dcc2e97735ee35d587960cbfbce932-dirty
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12 DEBUG:root:input_false_path: /home/svc_galaxy/new/galaxy/database/files/001/dataset_1033.dat
f493979f1408 planemo upload for repository https://github.com/Yating-L/hubarchivecreator-test commit 48b59e91e2dcc2e97735ee35d587960cbfbce932-dirty
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13 DEBUG:root:data_value: {u'order_index': u'10', u'name': u'blastXmlToPsl', u'track_color': u'#00b050', u'group_name': u'Default group'}
f493979f1408 planemo upload for repository https://github.com/Yating-L/hubarchivecreator-test commit 48b59e91e2dcc2e97735ee35d587960cbfbce932-dirty
yating-l
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14 DEBUG:root:Calling pslToBigPsl:
f493979f1408 planemo upload for repository https://github.com/Yating-L/hubarchivecreator-test commit 48b59e91e2dcc2e97735ee35d587960cbfbce932-dirty
yating-l
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15 DEBUG:root:---------
f493979f1408 planemo upload for repository https://github.com/Yating-L/hubarchivecreator-test commit 48b59e91e2dcc2e97735ee35d587960cbfbce932-dirty
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16 DEBUG:root:
f493979f1408 planemo upload for repository https://github.com/Yating-L/hubarchivecreator-test commit 48b59e91e2dcc2e97735ee35d587960cbfbce932-dirty
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17 DEBUG:root:Calling sort:
f493979f1408 planemo upload for repository https://github.com/Yating-L/hubarchivecreator-test commit 48b59e91e2dcc2e97735ee35d587960cbfbce932-dirty
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18 DEBUG:root:---------
f493979f1408 planemo upload for repository https://github.com/Yating-L/hubarchivecreator-test commit 48b59e91e2dcc2e97735ee35d587960cbfbce932-dirty
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19 DEBUG:root:
f493979f1408 planemo upload for repository https://github.com/Yating-L/hubarchivecreator-test commit 48b59e91e2dcc2e97735ee35d587960cbfbce932-dirty
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20 DEBUG:root:Hello
f493979f1408 planemo upload for repository https://github.com/Yating-L/hubarchivecreator-test commit 48b59e91e2dcc2e97735ee35d587960cbfbce932-dirty
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21 DEBUG:root:sorted_bed_file_name: /home/svc_galaxy/new/galaxy/database/tmp/tmp0NXyEzpsl
f493979f1408 planemo upload for repository https://github.com/Yating-L/hubarchivecreator-test commit 48b59e91e2dcc2e97735ee35d587960cbfbce932-dirty
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22 DEBUG:root:chrom_sizes_file_name: /home/svc_galaxy/new/galaxy/database/tmp/tmpG8McOt.chrom.sizes
f493979f1408 planemo upload for repository https://github.com/Yating-L/hubarchivecreator-test commit 48b59e91e2dcc2e97735ee35d587960cbfbce932-dirty
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23 DEBUG:root:big_bed_file_name: /home/svc_galaxy/new/galaxy/database/jobs_directory/000/967/dataset_1334_files/myHub/Dbia3/tracks/blastXmlToPsl.bb
f493979f1408 planemo upload for repository https://github.com/Yating-L/hubarchivecreator-test commit 48b59e91e2dcc2e97735ee35d587960cbfbce932-dirty
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24 DEBUG:root:typeOption: bed12+12
f493979f1408 planemo upload for repository https://github.com/Yating-L/hubarchivecreator-test commit 48b59e91e2dcc2e97735ee35d587960cbfbce932-dirty
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25 DEBUG:root:autoSql: /home/svc_galaxy/new/shed_tools/testtoolshed.g2.bx.psu.edu/repos/remimarenco/hubarchivecreator/b40c942bbcc0/hubarchivecreator/bigPsl.as
f493979f1408 planemo upload for repository https://github.com/Yating-L/hubarchivecreator-test commit 48b59e91e2dcc2e97735ee35d587960cbfbce932-dirty
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26 DEBUG:root:tab option: True
f493979f1408 planemo upload for repository https://github.com/Yating-L/hubarchivecreator-test commit 48b59e91e2dcc2e97735ee35d587960cbfbce932-dirty
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27 DEBUG:root:Calling bedToBigBed:
f493979f1408 planemo upload for repository https://github.com/Yating-L/hubarchivecreator-test commit 48b59e91e2dcc2e97735ee35d587960cbfbce932-dirty
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28 DEBUG:root:---------
f493979f1408 planemo upload for repository https://github.com/Yating-L/hubarchivecreator-test commit 48b59e91e2dcc2e97735ee35d587960cbfbce932-dirty
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29 DEBUG:root:
f493979f1408 planemo upload for repository https://github.com/Yating-L/hubarchivecreator-test commit 48b59e91e2dcc2e97735ee35d587960cbfbce932-dirty
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30 DEBUG:root:----- End of all_datatype_dictionary processing -----
f493979f1408 planemo upload for repository https://github.com/Yating-L/hubarchivecreator-test commit 48b59e91e2dcc2e97735ee35d587960cbfbce932-dirty
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31 DEBUG:root:all_datatype_ordered_dictionary keys are: [<Psl.Psl object at 0x155bb90>]
f493979f1408 planemo upload for repository https://github.com/Yating-L/hubarchivecreator-test commit 48b59e91e2dcc2e97735ee35d587960cbfbce932-dirty
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32 DEBUG:root:----- Beginning of Track adding processing -----
f493979f1408 planemo upload for repository https://github.com/Yating-L/hubarchivecreator-test commit 48b59e91e2dcc2e97735ee35d587960cbfbce932-dirty
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33 DEBUG:root:We just added in /home/svc_galaxy/new/galaxy/database/jobs_directory/000/967/dataset_1334_files/myHub/Dbia3/groups.txt the group Default group
f493979f1408 planemo upload for repository https://github.com/Yating-L/hubarchivecreator-test commit 48b59e91e2dcc2e97735ee35d587960cbfbce932-dirty
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34 DEBUG:root:We just added track blastXmlToPsl.bb (in group default_group)
f493979f1408 planemo upload for repository https://github.com/Yating-L/hubarchivecreator-test commit 48b59e91e2dcc2e97735ee35d587960cbfbce932-dirty
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35 DEBUG:root:----- End of Track adding processing -----
f493979f1408 planemo upload for repository https://github.com/Yating-L/hubarchivecreator-test commit 48b59e91e2dcc2e97735ee35d587960cbfbce932-dirty
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36 DEBUG:root:#### End of HubArchiveCreator Debug Mode: Bye! ####