Mercurial > repos > yating-l > hubarchivecreator
comparison util/install_linux_binaries @ 0:f493979f1408 draft default tip
planemo upload for repository https://github.com/Yating-L/hubarchivecreator-test commit 48b59e91e2dcc2e97735ee35d587960cbfbce932-dirty
| author | yating-l |
|---|---|
| date | Wed, 21 Dec 2016 12:13:04 -0500 |
| parents | |
| children |
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| -1:000000000000 | 0:f493979f1408 |
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| 1 #!/usr/bin/env bash | |
| 2 | |
| 3 localBinPath="/usr/local/bin/" | |
| 4 hgDownloadURl="http://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64/" | |
| 5 | |
| 6 # Binaries needed for HAC | |
| 7 twoBitInfo="twoBitInfo" | |
| 8 faToTwoBit="faToTwoBit" | |
| 9 gff3ToGenePred="gff3ToGenePred" | |
| 10 gtfToGenePred="gtfToGenePred" | |
| 11 genePredToBed="genePredToBed" | |
| 12 # sort="sort" | |
| 13 bedToBigBed="bedToBigBed" | |
| 14 | |
| 15 binariesArray=( ${twoBitInfo} ${faToTwoBit} ${gff3ToGenePred} ${gtfToGenePred} ${genePredToBed} ${bedToBigBed} ) | |
| 16 | |
| 17 # Download and install binaries | |
| 18 for binaryName in "${binariesArray[@]}" | |
| 19 do | |
| 20 binaryInstallationPath="${localBinPath}/${binaryName}" | |
| 21 sudo wget -P ${localBinPath} "${hgDownloadURl}/${binaryName}" | |
| 22 sudo chown ${USER} ${binaryInstallationPath} | |
| 23 sudo chmod +x ${binaryInstallationPath} | |
| 24 done |