Mercurial > repos > yating-l > hubarchivecreator
view util/install_linux_binaries @ 0:f493979f1408 draft default tip
planemo upload for repository https://github.com/Yating-L/hubarchivecreator-test commit 48b59e91e2dcc2e97735ee35d587960cbfbce932-dirty
author | yating-l |
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date | Wed, 21 Dec 2016 12:13:04 -0500 |
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#!/usr/bin/env bash localBinPath="/usr/local/bin/" hgDownloadURl="http://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64/" # Binaries needed for HAC twoBitInfo="twoBitInfo" faToTwoBit="faToTwoBit" gff3ToGenePred="gff3ToGenePred" gtfToGenePred="gtfToGenePred" genePredToBed="genePredToBed" # sort="sort" bedToBigBed="bedToBigBed" binariesArray=( ${twoBitInfo} ${faToTwoBit} ${gff3ToGenePred} ${gtfToGenePred} ${genePredToBed} ${bedToBigBed} ) # Download and install binaries for binaryName in "${binariesArray[@]}" do binaryInstallationPath="${localBinPath}/${binaryName}" sudo wget -P ${localBinPath} "${hgDownloadURl}/${binaryName}" sudo chown ${USER} ${binaryInstallationPath} sudo chmod +x ${binaryInstallationPath} done