Mercurial > repos > yating-l > jbrowsearchivecreator
changeset 10:e2ebf58c9068 draft
planemo upload for repository https://github.com/goeckslab/jbrowse-archive-creator.git commit 8ace9ad3a69a56a9b0d5feae266f90301d9aac77
| author | yating-l |
|---|---|
| date | Mon, 14 May 2018 21:37:50 -0400 |
| parents | 7cb67cbbd8e5 |
| children | 8886033b4f84 |
| files | datatypes/converters/blastxmlToGff3.py jbrowseArchiveCreator.xml tracks/CanvasFeatures.py |
| diffstat | 3 files changed, 4 insertions(+), 1 deletions(-) [+] |
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--- a/datatypes/converters/blastxmlToGff3.py Tue May 01 23:01:06 2018 -0400 +++ b/datatypes/converters/blastxmlToGff3.py Mon May 14 21:37:50 2018 -0400 @@ -65,6 +65,7 @@ group['parent_field']['source'] = source group['parent_field']['type'] = 'match' group['parent_attribute']['ID'] = contig_name + '_' + query_name + group['parent_attribute']['Name'] = query_name group['parent_attribute']['method'] = method group['parent_attribute']['length'] = length if contig_name not in seq_regions:
--- a/jbrowseArchiveCreator.xml Tue May 01 23:01:06 2018 -0400 +++ b/jbrowseArchiveCreator.xml Mon May 14 21:37:50 2018 -0400 @@ -1,4 +1,4 @@ -<tool id="jbrowse_hub" name="JBrowse Archive Creator" version="2.1.2"> +<tool id="jbrowse_hub" name="JBrowse Archive Creator" version="2.1.3"> <description> This Galaxy tool is used to prepare your files to be ready for displaying on JBrowse with Apollo plugin </description>
--- a/tracks/CanvasFeatures.py Tue May 01 23:01:06 2018 -0400 +++ b/tracks/CanvasFeatures.py Mon May 14 21:37:50 2018 -0400 @@ -30,6 +30,8 @@ track['glyph'] = "JBrowse/View/FeatureGlyph/Segments" else: track['urlTemplate'] = os.path.join('tracks', self.trackName) + if 'subfeatureClasses' in self.extraSettings: + track['subfeatureClasses'] = self.extraSettings['subfeatureClasses'] track['label'] = self.trackLabel track['category'] = self.extraSettings['category'] track['style'] = self.extraSettings['style']