Mercurial > repos > yating-l > package_ucsc_bigbed_340
annotate tool_dependencies.xml @ 1:e3faf2af4e59 draft default tip
planemo upload commit d476446dd23645b740023fe2abacabeefca4c5a1
| author | yating-l |
|---|---|
| date | Wed, 31 May 2017 11:39:04 -0400 |
| parents | b23d341df89d |
| children |
| rev | line source |
|---|---|
| 0 | 1 <?xml version="1.0" ?> |
| 2 <tool_dependency> | |
| 3 <package name="ucsc_bigbed" version="340"> | |
| 4 <install version="1.0"> | |
| 5 <actions_group> | |
| 6 <actions os="darwin" architecture="x86_64"> | |
| 7 <action type="download_by_url" | |
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e3faf2af4e59
planemo upload commit d476446dd23645b740023fe2abacabeefca4c5a1
yating-l
parents:
0
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8 sha256sum="02596b55cec0b4728e67173b7cd967819638c3be1674ef941950076c14fe3153"> |
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e3faf2af4e59
planemo upload commit d476446dd23645b740023fe2abacabeefca4c5a1
yating-l
parents:
0
diff
changeset
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9 http://old-gep.wustl.edu/~galaxy/packages/ucsc_bigbed_340_macOS_x86_64.tar.gz |
| 0 | 10 </action> |
| 11 <action type="move_directory_files"> | |
| 12 <source_directory>bin</source_directory> | |
| 13 <destination_directory>$INSTALL_DIR/bin</destination_directory> | |
| 14 </action> | |
| 15 </actions> | |
| 16 | |
| 17 <actions os="linux" architecture="x86_64"> | |
| 18 <action type="download_by_url" | |
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e3faf2af4e59
planemo upload commit d476446dd23645b740023fe2abacabeefca4c5a1
yating-l
parents:
0
diff
changeset
|
19 sha256sum="774daa14c87da81e69a9cbb46925d19882a7341e9fcb17a7ee4aac0004b4a6d3"> |
|
e3faf2af4e59
planemo upload commit d476446dd23645b740023fe2abacabeefca4c5a1
yating-l
parents:
0
diff
changeset
|
20 http://old-gep.wustl.edu/~galaxy/packages/ucsc_bigbed_340_linux_x86_64.tar.gz |
| 0 | 21 </action> |
| 22 <action type="move_directory_files"> | |
| 23 <source_directory>bin</source_directory> | |
| 24 <destination_directory>$INSTALL_DIR/bin</destination_directory> | |
| 25 </action> | |
| 26 </actions> | |
| 27 | |
| 28 <!-- Display error message for unsupported OS and CPU architecture --> | |
| 29 <actions> | |
| 30 <action type="shell_command"> | |
| 31 echo "ERROR: This package only supports 64-bit systems running macOS or Linux" | |
| 32 </action> | |
| 33 <action type="shell_command">false</action> | |
| 34 </actions> | |
| 35 | |
| 36 <!-- update $PATH environment variable --> | |
| 37 <action type="set_environment"> | |
| 38 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> | |
| 39 </action> | |
| 40 </actions_group> | |
| 41 </install> | |
| 42 <readme> | |
| 43 <![CDATA[ | |
| 44 This package contains the utilities for constructing | |
| 45 `bigBed files <https://genome.ucsc.edu/goldenpath/help/bigBed.html>`_. | |
| 46 The utilities were created by the | |
| 47 `Genome Bioinformatics Group <https://genome.ucsc.edu/staff.html>`_ | |
| 48 at the UCSC Genomics Institute. | |
| 49 | |
| 50 The bigBed file format is designed to store annotation features that | |
| 51 consists of one or more components. It is based on the | |
| 52 `BED <https://genome.ucsc.edu/FAQ/FAQformat.html#format1>`_ file format. | |
| 53 ]]> | |
| 54 </readme> | |
| 55 </package> | |
| 56 </tool_dependency> |