Mercurial > repos > yating-l > regtools_junctions_extract

annotate tool_dependencies.xml @ 0:01ed8e112f2a draft

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planemo upload commit 6bf6d4ec8ff2ec6bd45b5f483ff2f83b6229d57d
author yating-l
date Wed, 12 Apr 2017 17:44:58 -0400
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children 06d9062f5430
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="regtools" version="0.3.0">
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4 <install version="1.0">
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5 <actions>
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6 <action type="shell_command">git clone --recursive https://github.com/griffithlab/regtools.git</action>
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7 <action type="make_directory">build</action>
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8 <action type="change_directory">build</action>
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9
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10 <action type="set_environment_for_install">
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11 <repository changeset_revision="1aea698a1c63" name="package_cmake_3_2_3" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu">
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12 <package name="cmake" version="3.2.3" />
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13 </repository>
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14 </action>
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15 <action type="shell_command">cmake ..</action>
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16
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17 <action type="shell_command">make</action>
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18 <action type="move_file">
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19 <source>regtools</source>
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20 <destination>$INSTALL_DIR</destination>
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21 </action>
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22 <action type="set_environment">
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23 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR</environment_variable>
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24 </action>
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25 </actions>
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26 </install>
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27 </package>
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28 </tool_dependency>